BAC Information

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BAC

Clone NameMSMg01-121K11
Chromosome14 (Build37)
Map Location 100,535,753 - 100,536,025
singlet/doubletsinglet
Overlap geneKlf12
Upstream geneD14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121K11.T7 (MSMg01no121_k11.b1)MSMg01-121K11.TJ (MSMg01no121_k11.g1)
ACCAG331712AG331713
length806741
length of high quality
(start - end)
---273 (133 - 405)
definitionCHROMAT_FILE: MSMg01no121_k11.b1 PHD_FILE: MSMg01no121_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:30 2005CHROMAT_FILE: MSMg01no121_k11.g1 PHD_FILE: MSMg01no121_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAAAGGGGGNNAACCCGCCAGAGCAGGNGCGACGGNCGCAAAAAAGGG
AGGACTCTAAAXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGACCGCGG
AATCAGTGTTTCAAAAAAGGCCAGTTAGTGCATATGTGGTCACAGTGTCA
CAGCAAGTGCTCCTGGGCTGGTGTAATCAGGGCACTGTGGCAGTGACTGT
TGGAGTGCTGGTCCTTTGCGCTGCTGTGAGAAGACACTCTGGATTGTCTA
TTTGGTGGGTCGTTGTGGTGTGTGCTTGTCGATAGGAAACAGGTAGCGTA
TTGGGGCGGACACCGAATCGCACGCGGGCCTTTATGATCCCCTCACCGCC
GGTAAATAATTGGGTCTTTTTTTTTTTAGGCGCAACCCGCAATTTTTGGG
TTGGAGTTTTTTTTCCCCCCCCCCCCCCCCCCTGTATTTTTTTTTATTTT
ATAAAATTGATTTCCGCTCCGAAATATATATAAATTATACTTCCTTGATT
TGGGTGCCTCGGTGTCAGCCATGTACCCTCGCCTTTTTATATCCATTTTT
TTGTGTGCCAAAACAACGACTCCCCTTCCTTCTTTTTCTCATGTGGTTCA
TTACGAGAGTATTTTTATTTTTTTTTTTACCTGATATACGGTAAAACCAT
GTCTGGGGGGTTTTCTCCGCTTCTTCGTTTTGCGCTGCGACTGGCTTGTT
GTAATCACTCCCCGCTAGATACTTGTTTTTTTGGTAATACACGTTATCAA
CTTCCCCGTCTTATCTTGTACATGTATCCACGCGCGTATACACTCGCTGT
TCTTTT
GGAGAAGGGGGACGAAGAGGAGACGGGGAAAACAACAAACCGCAACGCCC
GNNCTGCGATGAAGGNGTAGCCTGGCGGCCCCTGTCCAACAACTTAGGTG
AACTATAGTTTGCACACGGAATCAGAGNGAATCTAGCTGGTCAAGAAAAA
CATTATAGGAAATATTTTAATGGAGAAAATATAGGGGTGTGAAACCCAAC
TGGGTTAAATATTTGGTGCAAAATAATATCAAATAAGTGAATTATGACTT
TTTCTTAGGATCAAGTTATATAATTTCTGCTAGCACTTAACTAATACATT
TACTAATCTCTCAACAATTCATTCAAAGGAAACCTTAAAATTTAAGAACT
GATCTGCCATTAACTTTTTTGTTTTATTACTGTATATTTCTATTTCAACA
ACAAACATTTTGTCCCCCCCCCTCCCCCCAGGTATGTATATCTAAACATC
TAAAGCTCCAATCTACTACCTAGTAAACATGTTGTAGTGCCTTTTAGAGT
GTAGAATGATGCTCAGTTGAGGTTCGGGCCTATAGCACCTGATGCCCTGG
AGTCGATTTTCTGACCATCCCAGGAAGTAATCTTATAATTCTCGAACCTT
TGTTGAATGAAGATTCTAACAATTGCCTTATATTTTGTAAACCTGACTTA
CATAGCTATCTATCCAGCCATCTCTCACAAGCCTTTCTAAAATTTTCACT
CTTTCTCCATGCCACCTTTTCTTTTTTCCGAGTTACTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_k11.g1 MSMg01no121_k11.g1 CHROMAT_FILE:
MSMg01no121_k11.g1 PHD_FILE: MSMg01no121_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:30 2005
         (273 letters)



>mm_chr14_100535553_100536225
          Length = 673

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagctggtcaagaaaaacattataggaaatattttaatggagaaaatataggggtgtga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagctggccaagaaaaacattataggaaatattttaatggagaaaatataggggtgtga 260

                                                                       
Query: 61  aacccaactgggttaaatatttggtgcaaaataatatcaaataagtgaattatgactttt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccacctgggttaaatatttggtgcaaaataatatcaaataagtgaattatgactttt 320

                                                                       
Query: 121 tcttaggatcaagttatataatttctgctagcacttaactaatacatttactaatctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttaggatcaagttatataatttctgctagcacttaactaatacatttactaatctctc 380

                                                                       
Query: 181 aacaattcattcaaaggaaaccttaaaatttaagaactgatctgccattaacttttttgt 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||
Sbjct: 381 aacaattcattcaaaggaaaccttaaaatttaagaattgatctgccattaactttaatgt 440

                                            
Query: 241 tttattactgtatatttctatttcaacaacaaa 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 tttattactgtatatttctatttcaacaacaaa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)