Query= MSMg01no122_a12.b1 MSMg01no122_a12.b1 CHROMAT_FILE:
MSMg01no122_a12.b1 PHD_FILE: MSMg01no122_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:02 2005
(749 letters)
>mm_chr14_79893607_79894755
Length = 1149
Score = 1410 bits (729), Expect = 0.0
Identities = 744/751 (99%), Gaps = 6/751 (0%)
Strand = Plus / Minus
Query: 1 gtcactcagtataagctctgcacttaaaatcactc--tttaaagaggccagggagatgac 58
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1101 gtcactcagtataagctctgcacttaaaatca-tcca---aaagaggccagggagatgac 1046
Query: 59 tcggtggatacaagtccttgccaccaagcctggtaaatggagttcaaccctgggaggaag 118
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1045 tcggtggatacaagtccttgccaccaagcctggtgaatggagttcaaccctgggaggaag 986
Query: 119 gaggaaactgactcctaagagttatcctctgacctctgtgcagatgctaccccatgcaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gaggaaactgactcctaagagttatcctctgacctctgtgcagatgctaccccatgcaca 926
Query: 179 aaacaataagtaaagaaatgtaacccataacccagaaggcctcagagcagagcagccatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aaacaataagtaaagaaatgtaacccataacccagaaggcctcagagcagagcagccatg 866
Query: 239 gggcagcgatcccgtgggccagcacatgtgagagtcatctgcacatgcaagcacacactc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gggcagcgatcccgtgggccagcacatgtgagagtcatctgcacatgcaagcacacactc 806
Query: 299 ccgagtcctacacctactgactcaaacgtaggtctcagaccaggagtctctccagatgac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccgagtcctacacctactgactcaaacgtaggtctcagaccaggagtctctccagatgac 746
Query: 359 cggaagttactccagcagcaagcagacctttgaacctcaacaaggcctggtggtagccat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cggaagttactccagcagcaagcagacctttgaacctcaacaaggcctggtggtagccat 686
Query: 419 tatacactgtcctggaacaccgcaattacactaaatcagtgtaattacaccacagtggga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatacactgtcctggaacaccgcaattacactaaatcagtgtaattacaccacagtggga 626
Query: 479 agttcccagctgaattcagcagatcctgtttaaggaatcagcaaggcatgcattcctcaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agttcccagctgaattcagcagatcctgtttaaggaatcagcaaggcatgcattcctcaa 566
Query: 539 gtattgtgtggaccttatatagaagatacttctgtgaattcgtgtttctcttttaaaaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtattgtgtggaccttatatagaagatacttctgtgaattcgtgtttctcttttaaaaag 506
Query: 599 gacatcctgatgactgatgcctttaaatccagccgctgtcctttctcattccatccgtgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacatcctgatgactgatgcctttaaatccagccgctgtcctttctcattccatccgtgt 446
Query: 659 cacaccagacttcctggaagacctgtctgtgtctgggcacaccatttcttcatttcccat 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacaccagacttcctggaagacctgtctgtgtctgggcacaccatttcttcatttcccat 386
Query: 719 tccttctccaacctaatcatctgcatcccgc 749
|||||||||||||||||||||||||||||||
Sbjct: 385 tccttctccaacctaatcatctgcatcccgc 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space: 841721
Effective search space used: 841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_a12.g1 MSMg01no122_a12.g1 CHROMAT_FILE:
MSMg01no122_a12.g1 PHD_FILE: MSMg01no122_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:02 2005
(716 letters)
>mm_chr14_79755094_79756211
Length = 1118
Score = 1270 bits (657), Expect = 0.0
Identities = 702/717 (97%), Gaps = 3/717 (0%)
Strand = Plus / Plus
Query: 1 cagcctgcttctgcctcctgcgtgctgcttttaaaggtatgcactaccatacccagcaca 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 201 cagcctgcttctgcctcctgcgtgctgggattaaaggtatgcactaccatacccaacaca 260
Query: 61 aactgaattttgcagccaggagcacaaacacatcatggccagaagccatagttagaacac 120
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 261 aactgaattttgcagccaggagcacaaaaacatcatggcaagaagccatagttagaacac 320
Query: 121 agattaatggaattttaaaaatag-ttattcttatgaatttaacgacaaacttgtatcag 179
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 321 agattaatgggattttaaaaataggttattcttatgaatttaacgacaaacttatatcag 380
Query: 180 agaacttcgattttcctaactcaggcaatcacatacttataagttatttcctacccttgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacttcgattttcctaactcaggcaatcacatacttataagttatttcctacccttgt 440
Query: 240 gaacctggaacacatttcctctgcttcttttatcatatttgctcgaagcatgtatttggc 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacctggagcacatttcctctgcttcttttatcatatttgctcgaagcatgtatttggc 500
Query: 300 acatttggaattgatgaacctgtcagccgtgtccaaagactgtgcctcatccatccactg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatttggaattgatgaacctgtcagccgtgtccaaagactgtgcctcatccatccactg 560
Query: 360 tgcggcttctttgagattacccatatgctgcaggaggaggaaaaccacttatgagcaagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcggcttctttgagattacccatatgctgcaggaggaggaaaaccacttatgagcaagt 620
Query: 420 aaaaaggagtgtcacagaaatggaaaacaatgtataaaaatgggttccagtttgacatga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaggagtgtcacagaaatggaaaacaatgtataaaaatgggttccagtttgacatga 680
Query: 480 ttgtatcagtttacctaaaaactagttaattatgattttactaagaactgaaccaaatgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtatcagtttacctaaaaactagttaattatgattttactaagaactgaaccaaatgg 740
Query: 540 ctaacactgattac-caataaagaattctttaggattattagaatatagaaaaaactgca 598
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaacactgattacacaataaagaattctttaggattattagaatatagaaaaaactgca 800
Query: 599 tgagaattctaggagttactgctacttcaagtcttttttaagatgacccagttccggcta 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 801 tgagaattctaggagttactgctacttcaagtcttttttaaaatgacccagttcctgcta 860
Query: 659 cccaaaaatcaaggggg-ctggagaaatggctcagtgtaagagctcctactgctctt 714
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 cccaaaaatcaaggggggctggagaaatggctcagtgtaagagctccgactgctctt 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1118
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1108
Effective search space: 782248
Effective search space used: 782248
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
