BAC Information

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BAC

Clone NameMSMg01-122F21
Chromosome14 (Build37)
Map Location 74,395,492 - 74,395,858
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
Downstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F21.T7 (MSMg01no122_f21.b1)MSMg01-122F21.TJ (MSMg01no122_f21.g1)
ACCAG332248AG332249
length1,042986
length of high quality
(start - end)
623 (125 - 747)603 (125 - 727)
definitionCHROMAT_FILE: MSMg01no122_f21.b1 PHD_FILE: MSMg01no122_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:44 2005CHROMAT_FILE: MSMg01no122_f21.g1 PHD_FILE: MSMg01no122_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTGTTTNNNNNNAGCACTGGGCGCTATGACTCACTATGGGAGAGGATC
CGCGGAATTCTTTGTTCAGTTCTCCCTTAATTTTCTAATGGGGTTATTTG
ATTTTCTGAAGTCCCTTTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGAATAGGTAAAGATCCCTTTCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAATTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAACTTTCAGTGTCTCTGGTTTTATGTGAATTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATTTATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCTCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGCTTGCTCTTCCTTCTTA
CAGCTCTTTCTGCTTCTGATGTGTAAGTTCATCTGAGGGGAGACAGCACA
TTCTCTCCCACCTGGAAATTCTTCCTGAGATGCTCTGGCTGGNTAGTCTA
GAGCTTTGGTGTTAAGCCTTATCCTGTGGTGTCAAAATGCTATTTTCTTG
TTGGTTCTTGTCATAAGCACTCTTCACCTCTTGCACTCACTGTATTTGTG
GTCCCCGAATCAATCTCTTATTCCCACCTTAAGTTTCCTAAGTCCTCAGG
AATGGTGGTCTAAATTTATTCTTCCTTTTTCCTGAATAAACCCAAATGGC
CAAATGGCTTTTAACAATGGGAAAAGGGGTTTTTGAATTGGT
NCCCATTATATTNNNAAAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAAACTTCACTAATAAGG
AAATACTTGAGTTTGTTCTTCTATTTCTTTTTCTTTTTTTTTTTTTAAGA
AAGGACCATTAAGAATTCATCAATGAGAAAATAAAATCAAATAGGAAAAT
GTGTTCACACCATATGCCACTAAGGGAATGTAATCTAAAGCAATGAGAGA
GTGACACACATAAGAGAGAACGGAGGAACCCAAAGGGGAGGATGTGCACC
AACAGGGTTTTTAAATTGCTACAGGGATGCGAAAGGATATACAGATTTGT
TACAACATGATTGTCAGTTTCCTACAAAATATACTCTTATCACATGACCC
AGCAATTTTACTCCTTCATAGTTACCTATGAGGTAGAAATTATATTCACA
CAAACACCTGAACTCAGTAGTGAGGTTCTTTAGCAGATGAATAAACTGTG
GTTATAGTCAGATAACGAAATATTGAACTGTTGAGCATAAAGAGACAGAC
ACAGGGAGCCTTAGATGCACACGCAGTTAAGAAGCCTTACTTCAAAAGGC
TATATACTGTATGATTCTAACTATGTGATATTCTAGGAATAACAGTGACG
GAAGGCCATACAATGATCAGCGATCAGAGGTTGCTAGGATTTGTCACGGA
CAAGGAATGAAAACTCAGAGCACAGAACTACTGGATAGAACAGTTGGGGA
TCATTTCTGACAAGTATAGCCATGGGCCACATGGCCCATCCCCACATTTG
AAAATTCCCTTTAAAAATTGGTCCAGCCCCTTTAAATGGCAAAAAACAGG
CTGTTCCCTTTTTCCAAAAATTGAAAGGGGGTTGGTTGGTTCCCCGGTTG
GATGGATGGGAATCTCTTTTTCCTGGGGGGGGGGGAAAATTTCCCCTGTG
GAAAGCCCCATTTTGGAAAACACCCCCAACATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f21.g1 MSMg01no122_f21.g1 CHROMAT_FILE:
MSMg01no122_f21.g1 PHD_FILE: MSMg01no122_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:44 2005
         (603 letters)



>mm_chr14_74395492_74396494
          Length = 1003

 Score =  694 bits (359), Expect = 0.0
 Identities = 364/367 (99%), Gaps = 3/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttttc---tttttttttttttaagaaaggaccattaagaattcatcaatgagaaaa 57
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttctttttcttttttttttttttttaagaaaggaccattaagaattcatcaatgagaaaa 308

                                                                       
Query: 58  taaaatcaaataggaaaatgtgttcacaccatatgccactaagggaatgtaatctaaagc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taaaatcaaataggaaaatgtgttcacaccatatgccactaagggaatgtaatctaaagc 248

                                                                       
Query: 118 aatgagagagtgacacacataagagagaacggaggaacccaaaggggaggatgtgcacca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aatgagagagtgacacacataagagagaacggaggaacccaaaggggaggatgtgcacca 188

                                                                       
Query: 178 acagggtttttaaattgctacagggatgcgaaaggatatacagatttgttacaacatgat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 acagggtttttaaattgctacagggatgcgaaaggatatacagatttgttacaacatgat 128

                                                                       
Query: 238 tgtcagtttcctacaaaatatactcttatcacatgacccagcaattttactccttcatag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgtcagtttcctacaaaatatactcttatcacatgacccagcaattttactccttcatag 68

                                                                       
Query: 298 ttacctatgaggtagaaattatattcacacaaacacctgaactcagtagtgaggttcttt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ttacctatgaggtagaaattatattcacacaaacacctgaactcagtagtgaggttcttt 8

                  
Query: 358 agcagat 364
           |||||||
Sbjct: 7   agcagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)