BAC Information

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BAC

Clone NameMSMg01-122H22
Chromosome14 (Build37)
Map Location 97,042,395 - 97,043,053
singlet/doubletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122H22.T7 (MSMg01no122_h22.b1)MSMg01-122H22.TJ (MSMg01no122_h22.g1)
ACCAG332343AG332344
length1,1841,207
length of high quality
(start - end)
---660 (86 - 745)
definitionCHROMAT_FILE: MSMg01no122_h22.b1 PHD_FILE: MSMg01no122_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:00 2005CHROMAT_FILE: MSMg01no122_h22.g1 PHD_FILE: MSMg01no122_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTTTNNNCNAACATTGGGCGCTATAGACTACTATGGGAGAGGATCCG
CGGAATTCTTTGTTTNNAGNTTCAGTCAGGGTTCCCANGAGGNNANNNGA
NNNNCNGGAGCTCTTTAAAAAAGGCCCNNNNNANANANANNGGANANNGG
NCCCCNANCGGAANNAGGGNAGANAAAGANCCNCCCCCAAGCGGGNGGCG
GNCNNNNNNNCNGGNNGANGGNGNCNNNAGCCNAGCAGAAGCNNGGCAAC
NNNAAGAGGNCCCANNGANCGANNCNGGANCNNACGGNACAAGCCANGGC
GGNNCNANNCAGGAANNNNNCCCCGGGACCCANANCNNCAAGGCCNNNNC
CAACNNNCNCCNCNANAAGNANCAGGGNCNCGGGNNNNAAGCGGATTTTT
TTAATCCACNNAGANNNGACNCNAGNACAAGGAGAAAGGAACACCCCAAT
TCACACCCCCCCACAGGAAAACCGCCAGNGGAGAAAAAAAGAGGGGGNGA
AAACGCCGGNCANNNNNCCACCGGAAGCAAAAAGCCCCCNGGGCGAAAAA
CAAGCGACCACAGGCGCGGGGGCCCACAACAGGGACCACACAACAACACC
AAAAGCCAACAGGCCGGCCACNACACCAGAACCAAGCAGCNAACAACACA
ACCGCCCAGCTAAACAGCCANAGGCCAGGCACGGAGACCCCACCAGAGGC
ACCACANCCACANAAACACCAACACAACAGGAAAGGGCACCGGCCCACAA
CAAAAAAACAGTATATTATAGCAGCCACCCCAAGGCAACTAGCAACACCA
GAAGAATAAGGCGAATCGGTCGATTCCTCATCCGTTGAAAAATTTTGTAT
TGGTAACATTTGTATCGGTCGACTGCACGGAACTTTGCACATTGGTATAT
CGGTCATAAAAGGCACTTTCTTATCACATGGTGGAATAGCGGTCCAATCA
ATCGGAAATATTGTTCGGTACTAATTCCCTTCACTATACGAAAATTCTCT
CTAGCATATATACCTACTTTGTTGCAAATATTATCATTTCTCTTTTAATT
CTGCAGTTTCCGTCCTTTCATATCCTCCTATTGTATGCTGACGACGACTC
TTTTATAACTATCTTATTACCCTACTATCACCTTGTTTCTAGTTTGATAA
GTGAGTTTGTGACACTGTACACCTCTGGTCTTTT
ATTTCTCCNTAAAAGAATGCGAGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTAGTATCTTTTTAGAAAGTATAT
AAGCATAAAAACTAACTTTAATGTTTGTAGTTCTTAAAAATGCCAAGAAG
AGTAATAATACTAAATATAGTGAAATATGTGAGTTTCAGATAAGACAGCA
TTTCCACAGCAATTGCACTGCCTCATTTATAATGTAGTAAAGTAAAAGTA
TTTAACTGGTATATTCTCTTATAAAGTTAAAAGAGACTGGCTATAAAAAT
TACATGTAATCAATATAAATGCAACCATAAAAGTCACCACATATGGTGCC
TTGCAATTTAATTTTATCTTCATAATTACTACTGATACCAGTTTTATATT
TAGAATACACAAATAAGTGAATACTTTGATATTTCACTTTATTGTGATTT
TAATAAAGGATATAATTTCTCATGTCAGCGTGTTTCAGTAAATACATTTA
TCTTTGAGAAAGTAAGGTAATAATTACTTTGTGATATGACATTTAGAAAC
TTGTATTTGCTCCCTCACAAGAAGCACAGTTTGGAAATCATCTGTGATTT
TTTTTTGAAAATAAATTAATAAAAATGCAGTCCTAAAAACGGTTTGGTTT
GTGTGAGTGGTCATTCTCAGTGTGCATTTGAATTAAAAAGTCATTTTGTG
TGCAACTTTGAATCTATGTGATGTTTTATCCAACAATTATATGTCAAAAA
ACCCTGGAAATTAATTATAAGTATATATGCCTTTTGAAAAAGATGATATA
GCACTCTCATCTACTTTACATACTTCAATTCCGAGTGATTAATTTACTTT
CATCCCCTCCCCTGAAAAAAAAAAACAGCGTGCTTATGCCGGAACCTTAC
GAAAAAAAAAATCCCCTCACTAGGATGCCCCCCCTAATTTCTATTAACCT
GCTTAAGTGCTTTTTTAAACCATGGCATATAAACCTTACCCCCCCCCTTT
GCTAAATCTGGTTAAATTTTGCTTTTTAATTAAAAGGGTACCCTTCGTGA
ATGCCCCAGGGTTTGGCACTCCCCCCCCTTAGCCCCGCACACAGCCCAAT
TTTATTGGAATCTTCCCTTTCTCCCCCCTCCTGGTACACAGGGCTCTTTC
TTAATGCAATACTGATATTGTTGGCCCTCCCCCCCCACTTCTTTGGCTCT
CCCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_h22.g1 MSMg01no122_h22.g1 CHROMAT_FILE:
MSMg01no122_h22.g1 PHD_FILE: MSMg01no122_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:00 2005
         (660 letters)



>mm_chr14_97042343_97043402
          Length = 1060

 Score = 1239 bits (641), Expect = 0.0
 Identities = 656/661 (99%), Gaps = 3/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttagaaagtatataagcataaaaact-aactttaatgtttgtagttcttaaaaatgcc 59
           |||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||
Sbjct: 711 ttttagaaagtatataagcataaaaactaaac-gtaatgtttgtagttcttaaaaatgcc 653

                                                                       
Query: 60  aagaagagtaataatactaaatatagtgaaatatgtgagtttcagataagacagcatttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagaagagtaataatactaaatatagtgaaatatgtgagtttcagataagacagcatttc 593

                                                                       
Query: 120 cacagcaattgcactgcctcatttataatgtagtaaagtaaaagtatttaactggtatat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cacagcaattgcactgcctcatttataatgtagtaaagtaaaagtatttaactggtatat 533

                                                                       
Query: 180 tctcttataaagttaaaagagactggctataaaaattacatgtaatcaatataaatgcaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctcttataaagttaaaagagactggctataaaaattacatgtaatcaatataaatgcaa 473

                                                                       
Query: 240 ccataaaagtcaccacatatggtgccttgcaatttaattttatcttcataattactactg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccataaaagtcaccacatatggtgccttgcaatttaattttatcttcataattactactg 413

                                                                       
Query: 300 ataccagttttatatttagaatacacaaataagtgaatactttgatatttcactttattg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ataccagttttatatttagaatacacaaataagtgaatactttgatatttcactttattg 353

                                                                       
Query: 360 tgattttaataaaggatataatttctcatgtcagcgtgtttcagtaaatacatttatctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgattttaataaaggatataatttctcatgtcagcgtgtttcagtaaatacatttatctt 293

                                                                       
Query: 420 tgagaaagtaaggtaataattactttgtgatatgacatttagaaacttgtatttgctccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgagaaagtaaggtaataattactttgtgatatgacatttagaaacttgtatttgctccc 233

                                                                       
Query: 480 tcacaagaagcacagtttggaaatcatctgtgatttttttttgaaaataaattaataaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcacaagaagcacagtttggaaatcatctgtgatttttttttgaaaataaattaataaaa 173

                                                                       
Query: 540 atgcagtcctaaaaacggtttggtttgtgtgagtggtcattctcagtgtgcatttgaatt 599
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 atgcagtcctaaaaatggtttggtttgtgtgagtggtcattctcagtgtgcatttgaatt 113

                                                                       
Query: 600 aaaaagtcattttgtgtgcaactttgaatctatgtgatgttttatccaacaattatatgt 659
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaaaagtcattttgtgtgcaac-ttgaatctatgtgatgttttatccaacaattatatgt 54

            
Query: 660 c 660
           |
Sbjct: 53  c 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)