BAC Information

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BAC

Clone NameMSMg01-123K08
Chromosome14 (Build37)
Map Location 55,492,155 - 55,492,644
singlet/doubletsinglet
Overlap genenone
Upstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez
Downstream genePpp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123K08.T7 (MSMg01no123_k08.b1)MSMg01-123K08.TJ (MSMg01no123_k08.g1)
ACCAG333197AG333198
length1,2831,198
length of high quality
(start - end)		441 (121 - 561)649 (72 - 720)
definitionCHROMAT_FILE: MSMg01no123_k08.b1 PHD_FILE: MSMg01no123_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:39 2005CHROMAT_FILE: MSMg01no123_k08.g1 PHD_FILE: MSMg01no123_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCGGCTATGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
CCAATGACCTCTAATTCCTTAGAACAAAGGATGACCTTGAATTTTTTTTT
TTTTTTTCTTATTTCTTTTGTTTGTCTTTTTAGGGCAAGATTTCTCGGTG
TGGCCCTGGCTGGCCTCGGGCTCACAGAGGTCCGCCTGCCTCTGCCTCCC
AAGAGCTGGGATGAAAGGCATGTGCCACCATGCCTGGTAAGATTTATTTT
TACTTTATGTGTATGGTGCCCTGTCTACATGTATGTTTGTGTGACATGTT
TATACCTGCTACTTTCAGAGTCCAGAAGAAGGTGCTAGATGCCTTAGAAC
TGGAGTTATAGATAGTTGCGACTTGCCACGTGTGAGCTGGGAATTGATCT
TATGTCTTCTGGAAGAGCAGTTGGTATTTTGTTTAGATTTATTTATTTAT
TTTATGTAGATAAGCACACTACTTCAGACACCCCAGAAGAGGGCATTGGA
TACCATTACAGACAGTTGTGAGCCACCATGGGGTTGCTGGGAATTGAACT
CAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTC
TAGCTTGGACTTTAAATCTTTGATCACCTTCCAAAATGCTGGGATCCAAC
CACCATGCCTTCTCTCTTCTGTCTTCCTGCCTTCCACCCTGTCTGTCTGT
CTTTTTGTCGCCGCTTGTAATTGACCTGCGCACCTCCTATCTGTTTGCCA
TTCTCTTATCCCCCGTCTTACCTTTTTCTCCTTTATCTCTTATCCCTTTT
ATTTTTCATCCCTTCCCCCACCATCCTTCGTCCCTTTCTTTCTCTTATCA
TTTCCCTTTCTTTCTTTCTCTCATCTCCTCCTTATCTCCTCTCTCCTTCT
CCCTTCTTCTCTCCTCCTTTTCCTTTTTCTCTTTTCTCTGCTCTCTCCTC
TTCCTCCCTCTTCCTTCCTTTTATTTCCTCTTCTTCTCTTCTCCTTATCA
TCCATTCTCTTCTTCCCTTCCTCTTTCCCCCTTTTTCTCATCTCCTCTCT
TCTCTTCTTCTCCTTCCTCTTCCCTCTCTTCTCTTTCTCACCTTCCTTCT
CTTTCACCCTTATCTCCTCTTTCACTCCTTCTCCCTCTTCCCTACTTCTC
TCTCCTCTTCTCACCCTCTCCCCTTTCTTCCATCATCTTTACTCTCAACT
CTCCTTCTTTCTCCTATCCTCCACCTTCTCTTCCTTTCTAACTCCTCGTT
CCACCTCTCCCTACTCTCTCCCTCTCTCCTCCG

CTTTTTCCAGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTTGGGGCTCGTTCTTTGGCCCCTCTG
GTCATGCCTCTTATAAATGCCTATTTACGCATCATCTTCCCTTGAGAAGA
AGATGGTTGGATGCATCTGTGGACCACCTTCAGGTTCAGCAAAGTAAAAG
GAAGAACTCTCTTGGAAACTCCCAAACAATGCACTCTCTAGTCTTCAACA
AGGAGCCCAGGGAGACGGGGTTGAGGGTCAGGTGTTACAACATCATCCTT
AATGTGTGTGCATTATTGTTGCGTCATATTAACAATAGTAACAGCTCCCA
TTTAACTTTTGTGTGCTAAATGTTTTACATGCATGTTTAAAGCGGCACTG
GGACTTGAGCACTGTTATTCCTGTTTTAGAAATAAGTCTAAGCTCAGTAA
TTTGTTCAGGACTGTAGGATTGTGATCCCAGGAAGTCCCACGAGTCTGTG
TGTAACCGTGGTGGTATGTATTTTTTTTTCNNTAAAAACAAAATTAAAAA
CTTTGCTACATATCTACCATTTACCATAGGGAAAGACCATTGTTCCTCAT
TATGCTGTGCCTTCCTGTCCTCCAAAGGCCCCAGACTTTCCCCTGCTGTC
TCCTGTGCCAGCATTCCAGCTCTGCAGGGTCAGCAAGCAGCATCCCACCT
GCGTGCTAGAGAACTTGGAACCTACTGAAATGTCCGGCTCCCTATAGGGG
GGCTTCTGTCCTGTCTCTGGCCAAACCACCATACCATTGGTGTGCACCTC
CTTCCCTCCCTCCACATCCGTTACCCTTTGCCCAGGAAAATTATTTGATG
TTTCCCCCAAGAATGGTTCCAAACTTTAGGGTAACTGCTAGGCTGTCTTT
GTCTGGTCTTTTCTTCCTTGGGGACCTCCCGTGTAATATTTGATATTGGT
TCTATTTTGTACTTTTGTCCCCCTCTCCTATACTTCTATCTGTCTCCCAC
TGGACTTCTTCCTGCCAAAAAATTTTCCCTGGTTCTTTTCCTCCTTCTCC
TCCCTTGTCCTCCTATCCCTATATATACTAATTGATCATCTTCTTTCTCA
ACTCTTCTGTCTTTCCTCTTCTTTCTTCTACTCTTTTCCTAATACTCTTC
TTCTCTCTCATCTACGTCTATTCTATGAACTCTCTCTTTATATCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_k08.g1 MSMg01no123_k08.g1 CHROMAT_FILE:
MSMg01no123_k08.g1 PHD_FILE: MSMg01no123_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:39 2005
         (649 letters)



>mm_chr14_55492155_55493203
          Length = 1049

 Score =  920 bits (476), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gtttggggctcgttctttggcccctctggtcatgcctcttataaatgcctatttacgcat 61
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 490 gtttggggctcgttctttggcccctctggtcatgcctcagataaatgcctatttacgcat 431

                                                                       
Query: 62  catcttcccttgagaagaagatggttggatgcatctgtggaccaccttcaggttcagcaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 catcttcccttgagaagaagatggttggatgcatctgtggaccaccttcaggttcagcaa 371

                                                                       
Query: 122 agtaaaaggaagaactctcttggaaactcccaaacaatgcactctctagtcttcaacaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agtaaaaggaagaactctcttggaaactcccaaacaatgcactctctagtcttcaacaag 311

                                                                       
Query: 182 gagcccagggagacggggttgagggtcaggtgttacaacatcatccttaatgtgtgtgca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gagcccagggagacggggttgagggtcaggtgttacaacatcatccttaatgtgtgtgca 251

                                                                       
Query: 242 ttattgttgcgtcatattaacaatagtaacagctcccatttaacttttgtgtgctaaatg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttattgttgcgtcatattaacaatagtaacagctcccatttaacttttgtgtgctaaatg 191

                                                                       
Query: 302 ttttacatgcatgtttaaagcggcactgggacttgagcactgttattcctgttttagaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttttacatgcatgtttaaagcggcactgggacttgagcactgttattcctgttttagaaa 131

                                                                       
Query: 362 taagtctaagctcagtaatttgttcaggactgtaggattgtgatcccaggaagtcccacg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 taagtctaagctcagtaatttgttcaggactgtaggattgtgatcccaggaagtcccacg 71

                                                                       
Query: 422 agtctgtgtgtaaccgtggtggtatgtatttttttttcnntaaaaacaaaattaaaaact 481
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 70  agtctgtgtgtaaccgtggtggtatgtatttttttttctttaaaaacaaaattaaaaact 11

                     
Query: 482 ttgctacata 491
           ||||||||||
Sbjct: 10  ttgctacata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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