Query= MSMg01no123_k14.b1 MSMg01no123_k14.b1 CHROMAT_FILE:
MSMg01no123_k14.b1 PHD_FILE: MSMg01no123_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:41 2005
(209 letters)
>mm_chr14_76909600_76910208
Length = 609
Score = 286 bits (148), Expect = 5e-82
Identities = 193/216 (89%), Gaps = 14/216 (6%)
Strand = Plus / Minus
Query: 1 ccttctggcacgaccccagccaaccagggtggccgtttgtcataacaggtcgtcacggca 60
|||||||| | |||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct: 341 ccttctgggaagaccccagccaaccagtgtggtcgtttgtcacaacaggtcgtcacggca 282
Query: 61 gtcctgcttaaggaaagacacggagcacttagaaagcaacagagaccatcttcattgcaa 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 281 gtcctgcttaaggaaagacacggagcacttagaaagcaacggagaccatcttcattgcaa 222
Query: 121 tgtatgttgtccttggaaact-------ttttttttttgttttgagaactacacagtctt 173
|||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 221 tgtatgttgtccctggaaactcagagaattg-------gttttgagaactacacagtctt 169
Query: 174 gtagcacacacatccacagtcacaatcttggaccct 209
||||||||||||||||||||||||||||||| ||||
Sbjct: 168 gtagcacacacatccacagtcacaatcttggtccct 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_k14.g1 MSMg01no123_k14.g1 CHROMAT_FILE:
MSMg01no123_k14.g1 PHD_FILE: MSMg01no123_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:41 2005
(609 letters)
>mm_chr14_76827793_76828806
Length = 1014
Score = 1135 bits (587), Expect = 0.0
Identities = 605/613 (98%), Gaps = 5/613 (0%)
Strand = Plus / Plus
Query: 2 ttgatatcccatgtacatttctgagtattctttgaatgacttacaaattcagaattgttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttgatatcccatgtacatttctgagtattctttgaatgacttacaaattcagaattgttt 261
Query: 62 gttagtaaagacttaattctctcaatagcttattcaggttatttagttactacctttttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttagtaaagacttaattctctcaatagcttattcaggttatttagttactacctttttt 321
Query: 122 t-gtctttaggctttcttagtgtgcctatacatactaacaaatagtatattgactggtta 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 ttgtctttaggctttcttagtgtgcctatacatactaacaaatagtatattgactggcta 381
Query: 181 ggagtgctttgaaaggatactcagagttgaaatggtacttacccttaaaatcgccacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggagtgctttgaaaggatactcagagttgaaatggtacttacccttaaaatcgccacatg 441
Query: 241 attatggtgtatctcagtagcagcagtgataagggtactttcatgtagtttttaatttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attatggtgtatctcagtagcagcagtgataagggtactttcatgtagtttttaatttgt 501
Query: 301 ttttaattaagcactttgagttagattatgccctcttgaggctctgtcctgcctgggagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttttaattaagcactttgagttagattatgccctcttgaggctctgtcctgcctgggagt 561
Query: 361 tggtagtttctgccatatgttgtgtgctgttcagactccaatcacatcagtggtggcgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tggtagtttctgccatatgttgtgtgctgttcagactccaatcacatcagtggtggcgtt 621
Query: 421 ggtgtagagtagtggagaaccagcaccactgttctgacttgtctgagcacatgggtgcta 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 622 ggtgtagagtagtggagaaccagcaccactgttctgagttgtctgagcacatgggtgcta 681
Query: 481 ----cttaatcttctgaatatctattttggcttcatatttatccccattttacaggtgag 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gctacttaatcttctgaacatctattttggcttcatatttatccccattttacaggtgag 741
Query: 537 gaaactgaggagagagagagaagccttttattcagtatggtgggatctgggatttgtgca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaaactgaggagagagagagaagccttttattcagtatggtgggatctgggatttgtgca 801
Query: 597 tggaattcttgtt 609
|||||||||||||
Sbjct: 802 tggaattcttgtt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1014
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1004
Effective search space: 601396
Effective search space used: 601396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
