BAC Information

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BAC

Clone NameMSMg01-124A18
Chromosome14 (Build37)
Map Location 17,997,380 - 17,998,127
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124A18.T7 (MSMg01no124_a18.b1)MSMg01-124A18.TJ (MSMg01no124_a18.g1)
ACCAG333500AG333501
length1,2061,219
length of high quality
(start - end)
425 (30 - 454)748 (121 - 868)
definitionCHROMAT_FILE: MSMg01no124_a18.b1 PHD_FILE: MSMg01no124_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:36 2005CHROMAT_FILE: MSMg01no124_a18.g1 PHD_FILE: MSMg01no124_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTTTGTTTAGCTCTGAGCCCTATTTTTAATGGCGTTATTTGATTTTCTG
GAGTCCACCTTTTTGAATTCTTTATATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGAGCCTTTCCCAATCTGTTGGTGATCTTTTTG
TCTTATTGGCGGTGTCTTTTGTCTTGCAGAAGCTTTGCCACTTCATGAGG
TCCCATTTATTGATTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATT
CAGGTTTTCCCCCAGTACCCATATCTTAGAGGCTGTTCCATAGTTTCTCC
TCTACAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTT
ATATTTGACATTAGTACAAGGAGATAGGAATGGATAAATTCGTATTCTTC
TTTTTGATACCCGCCAGTTGTGCCAGCACCATTTGTTGAAAATACTGTCT
ATTTTCCACTGGATGGTTTTAGCGCCCTTTTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTT
GTCCATAGCTATACCAGTAGCACTGCAGTTTTTATCACAATTGCTCTGTA
GTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTCATTCT
TGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATCTG
TCGCTTGCCCTTTCTCATTCGTTGAAGAATTGAGTTGGAATTTTGATGGG
GATTGCATTGAATCTGTAGATTGCTTTTGGTAAGATTGCCCTCTTTACCA
TGTTGATCCTGCCAAACCATGAGCATGCGAGATCTTTCCATCTTCTGAGA
TCTTCTTTAATTTCTTTTCTTTAAGACTTGAAGTTCTTATCATACAGATT
TTTCCCGTCCTTAGCTTCCCCCCAGGGATTTTATCTTTTTTGTGACTATT
TATAAAGGTGTTGGTTTCCTAATTTCTTTTCTCAGCCTGTTTTACCTTTG
TGTTACCAAAGGAACACTTTACTTTGTTTGAACTTAATTTTTAATCCCGC
TTACTTAACCCCAAACTGTTTTATCTAGCTTTATGGAATCCTCCCGGGGC
GCATATTTTTGGCGCCCTCTTTTTTTATTCACATTCTACTCTCCTCTTAA
AGGGGG
TTTTTTTTAACATGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTCTTAAGCGATCTCAAATCATAGTTCTAT
TTGTTAAGTTCCCTGTAAACTATTGCCTAATAGACTATCAGCCTTACAAG
ACCAATTAATTTACCTTCTTACTCCCTGATTAATATCTAACCTTTAGACT
GACACCTGATACAAGTAGATAATCAATATAGACTTGTGGAACCAATCAAT
AAACCAGCAATGATGAATATAGATATACATCCAGGAGTTTTGATACATTA
TTTCCCAGTTCCTCATCAATTACATACCTGCCCCCTTTTCTCTAATCCAA
ATTTATCCTTTAAATCTCGCCCACCTGTTCATTCTCGATAAACACCATTA
AGGACTTTACATACTCCTTGACTTACTAACCAAAAATTCACTATTCAATT
CAATCATTCCTCACAGTCACATACATACATACATACATATCTGTGTATGT
ATGCATGAAATTGAGTCAAAGAGTTAACAGAGGCCCAACTCAGGAAAAGT
CTTGAGGATACGGTGTGGCTATGATAAAAGGCTCTCAGAGAGAGTCAAAT
GAGCCTTTGTCATCAAGAGATGATCACTTTAATAAAGCCAGCTGAGGTAC
ATGTGAGGCAATGGTATACATGAAACTGTTATCCAAGAAGCAGATGGTCT
ATAAACATGTTCTTTCCTTCCTGACCTTTTCTGTGACTCAAACTAGGTTC
ACTGATGAACTTCATTTAAAAGTCTGTTTCCTTTGAAGTAAGAGACTCAG
TGCCCTTGCCTACTCTCCTCTCTTTCATTGCAGGCCCTCATTGTGAGCAG
GGTCTGCGTGCTTTGCCAGTGCAAAGGAACACAGGGTTCCATCACTGCCT
CTGCCCAGGTTAGTAAAATTGTTATTTCGTTCATGCCCTGCTCATGTCTC
CTACTCAGAACCATTCCTTTTTCTTCTAGATCAGAATCACTGTTATCTAC
CATTCAGTCTCTCAGGGAACCCTTTATGTAAATTTTTATCCCTCCAACCC
TATACGGGGCATTGTTCTCAAGGAAAATGAAAAGACATTTGCGGGGATCT
TCCCTTAGCCACGGGTACTAAAATTCTTTTCCCCCCCAAAAAGCCCCCTG
ATTTTCTAGGGTGTTAAAGATATCCTTCCCAAAAATCCACTGTGGGCTTT
TTTTTACCCGGCCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_a18.g1 MSMg01no124_a18.g1 CHROMAT_FILE:
MSMg01no124_a18.g1 PHD_FILE: MSMg01no124_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:36 2005
         (748 letters)



>mm_chr14_17997180_17998327
          Length = 1148

 Score = 1392 bits (720), Expect = 0.0
 Identities = 741/748 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgcctaatagactatcagccttacaagaccaattaatttaccttcttactccctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgcctaatagactatcagccttacaagaccaattaatttaccttcttactccctgat 260

                                                                       
Query: 61  taatatctaacctttagactgacacctgatacaagtagataatcaatatagacttgtgga 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 taatatctaacctttagactgacacctgatacaagtaggtaatcaatatagacttgtgga 320

                                                                       
Query: 121 accaatcaataaaccagcaatgatgaatatagatatacatccaggagttttgatacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaatcaataaaccagcaatgatgaatatagatatacatccaggagttttgatacatta 380

                                                                       
Query: 181 tttcccagttcctcatcaattacatacctgcccccttttctctaatccaaatttatcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcccagttcctcatcaattacatacctgcccccttttctctaatccaaatttatcctt 440

                                                                       
Query: 241 taaatctcgcccacctgttcattctcgataaacaccattaaggactttacatactccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatctcgcccacctgttcattctcgataaacaccattaaggactttacatactccttg 500

                                                                       
Query: 301 acttactaaccaaaaattcactattcaattcaatcattcctcacagtcacatacatacat 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 acttactaaccaaaaattcactattcaattcagtcattcctcacagtcacatacatacat 560

                                                                       
Query: 361 acatacatatctgtgtatgtatgcatgaaattgagtcaaagagttaacagaggcccaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatacatatctgtgtatgtatgcatgaaattgagtcaaagagttaacagaggcccaact 620

                                                                       
Query: 421 caggaaaagtcttgaggatacggtgtggctatgataaaaggctctcagagagagtcaaat 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggaagagtcttgaggatacggtgtggctatgataaaaggctctcagagagagtcaaat 680

                                                                       
Query: 481 gagcctttgtcatcaagagatgatcactttaataaagccagctgaggtacatgtgaggca 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcctttgttatcaagagatgatcactttaataaagccagctgaggtacatgtgaggca 740

                                                                       
Query: 541 atggtatacatgaaactgttatccaagaagcagatggtctataaacatgttctttccttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggtatacatgaaactgttatccaagaagcagatggtctataaacatgttctttccttc 800

                                                                       
Query: 601 ctgaccttttctgtgactcaaactaggttcactgatgaacttcatttaaaagtctgtttc 660
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgacattttctgtgactcaaactaggttcactgatgaacttcatttaaaagtctgtttc 860

                                                                       
Query: 661 ctttgaagtaagagactcagtgcccttgcctactctcctctctttcattgcaggccctca 720
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 861 ctttgaagtaagagactcagtgcccttgcctactctcctccctttcattgcaggccctca 920

                                       
Query: 721 ttgtgagcagggtctgcgtgctttgcca 748
           |||||||||||||| |||||||||||||
Sbjct: 921 ttgtgagcagggtcggcgtgctttgcca 948


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space:   839844
Effective search space used:   839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)