BAC Information

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BAC

Clone NameMSMg01-124I03
Chromosome14 (Build37)
Map Location 66,173,353 - 66,173,680
singlet/doubletsinglet
Overlap geneElp3
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc
Downstream geneGm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124I03.T7 (MSMg01no124_i03.b1)MSMg01-124I03.TJ (MSMg01no124_i03.g1)
ACCAG333843AG333844
length1,3001,284
length of high quality
(start - end)
44 (57 - 100)420 (115 - 534)
definitionCHROMAT_FILE: MSMg01no124_i03.b1 PHD_FILE: MSMg01no124_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:42 2005CHROMAT_FILE: MSMg01no124_i03.g1 PHD_FILE: MSMg01no124_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATACTTAGATGCCCCNTCCATAGGCAACTGCATTCATGTGACATCTAAGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGCGT
GACCCCTTATACTACCCCCACTCATCATCTACTCATATACCACATAACCA
CCTAATCACTAANCTATCAAATCCTTCACTCTTTATACCATTACCTAACC
TACTACCTACTCACTTTACATCAATCCCACCTCTATATTCACTCCTCTCA
CTCCATTCACCTTCTCCCCCCCAAATTATTACACCCAACAATCCAAACAT
AACTCAACAATATAATCTCTCCCCTTCTTCCATTCTCACCCTCACCCCCC
CTACCATTTTTTTTTTTTTTCTCCCACTAACCCCCCACCCCCACTACCAA
CAACAATCAACCCTCCCCCTTACCCACCCCCCCTACAATATTATACTCCC
CTTCACTACACCACCTTAATCATCCTACTTACTCTCTCTCCCACTCTACA
CCCTATCCACCTCTCCCATCATCCATACCCAATACCAATCTCCTAATCCT
ACTCACATACATTATTATACCACTTACACATATCTTCCACCCCCCCTCCT
CCAACACTACCCCTTCATCTATACCCCCTTCACTCTCCACCTCCACCTCA
CCCTCAATCACCCCCTCAACTCTACCAACCTACCCCATCACCTCACTTTC
ACACTTACCAATCCAACTACAATCACTACAACACACCCACATCTCCATTT
ACCTACATACATACTTCCCATCTTTCCACCTATACCCACACTCTCAAACA
AACTACTCCCCCATAAACTCCCCTCCTACACCTCACTCCACTCCCATCTA
CCCAACACTCCATTCCACATCTCTCCCTCTTCACTTCACACCATCCCTCC
TACACCTCTTTCCCCTCCTAAACATCACCTCACTAACCCACAGCCTGCCT
CCACATCCCACAATTCACCAACTCATATAATCCAACTCTCTAACAACTAA
TCCCATATCCTAATACCACCCCTCCCTCCCCACTCTCACTTCAACTCCCC
TCCTCTTCTCACACACTACTTCTTCACACACACTTTCTACAACTTTTACT
ATCCTAACATCCATTCATCACTCACAACATCCATCCAAACATCGTCTCTA
CTACACCACACTATCTCACCTTCCTCATCTCTATTCCACTCTCACATCTA
CACCTCCTCCTCTCCTCCCCTCTCATAATCTCTCATAACGCCTAACCCCA
CTTCTAATATCCACTCCACTCCTCACATACATCTCCCATCCTCACCCTTA

CCATGGTAGCTGGTGCCCCAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTTTAAGGGTCCACTCATTTGGAATCCTCTTACCTGGGC
CCCTTTGAAGCTAAGGAACTGATAGTTCCTGCAGAGTGAGACACTGAACA
CCAGAACATTCCGACAGCATCATTCTGGTGTGAAGTGGTATCAAGTGTGT
TTAAACCCCTGAAATGACATTTTGAGGGGTATTAAAATTTATATTCAGAT
TGAGGTAGAATCTGTTATGTCAACCTCAAGAACTTGTATCAAGAACTGGA
TGATAAAACTTTAAATGAAAATGTAAATGAGCGACATAAACCTTATTACA
GAGATGCAGAGGATGGGCTGGAAAGACGGCTCAGCCACTAAGTTTTTGCA
CTGCTACTGTGAAGGACCAGGGTCGTGATACCAGCACCCACAGCCACCCA
GGGTCGTGATACCAGCACCCACAGCCACCCAGGGTCGTGATACCAGCACC
CACAGCCACCCAGGGTCGTGATACCAGCACCCACAGCCACCCAGGGTCGT
GATACCAGCACCCACAGCCACCCAGGGTCGTGATACCAGCACCCACAGCC
TCCCACGGTCGTGATACCAGCACCCACAGCCACCCAGGGTCGTGATACCA
GCACCCACAGCCACCCATGGTCGTGATACCAGCTCCCACAGCCACCCAGG
GTCGTGATACCATCACCCACACCCTCCCCAGGGTCGTCGATACCAGCTTC
CTACAGTCACCTCGTGTAGCCCCCTCTCCTGTCCCATAGAACCCCGACTC
CCCTATACTGCCCTCCATGCACCCCCTTTCCTCCTGGTATACTCCAATAT
TCCCCACATCAATCTTAATTTTAAAAATTTAATTTAACTTTCCTTTCCAA
TTGTATAAGCGTTTTCCCAAGTAAATGCTTTGTTTGCTCACCATCTTACT
TTGAAAACTCCATATCATCTGTCTTTTTCCGGTCAGTTTTCTTCCTACTC
CCCCTTCCTTATAATTTTTTAATCCTACCTTTTGTCCTCTCTATAACAAC
TTCTGTTTCTTTCTTCTCTTTTTTCTTATGCCCCCTTCCTCCCTAATGTG
CTAACTCTTAAACACTAACTTCCTTTTAAATCGCAACCCCCCTCTAACTT
CTTAGAAAATCCTATTCTTATCCTCGGTTCACGTTCTTCTTATTTATACA
CTCTGTTTTCTGCTCCATCACCTCCAATATCTAAGATGTCATATTCCCCA
GCGTTCCCCTATTTTTTCTCTGTTAACACTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_i03.g1 MSMg01no124_i03.g1 CHROMAT_FILE:
MSMg01no124_i03.g1 PHD_FILE: MSMg01no124_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:42 2005
         (420 letters)



>mm_chr14_66173231_66174050
          Length = 820

 Score =  543 bits (281), Expect = e-159
 Identities = 316/333 (94%), Gaps = 10/333 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaactgatagttcctgcagagtgagacactgaacaccagaacattccgacagcatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 450 ggaactgatagttcctgcagagtgagacactgaacaccagaacattctgacagcatcatt 391

                                                                       
Query: 61  ctggtgtgaagtggtatcaagtgtgtttaaacccctgaaatgacattttgaggggtatta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctggtgtaaagtggtatcaagtgtgtttaaacccctgaaatgacattttgaggggtatta 331

                                                                       
Query: 121 aaatttatattcagattgaggtagaatctgttatgtcaacctcaagaacttgtatcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaatttatattcagattgaggtagaatctgttatgtcaacctcaagaacttgtatcaaga 271

                                                                       
Query: 181 actggatgataaaactttaaatgaaaatgtaaatgagcgacataaaccttattacagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 actggatgataaaactttaaatgaaaatgtaaatgagcgacataaaccttattacagaga 211

                                                                       
Query: 241 tgcagaggatgggctggaaagacggctcagccactaagttttt-----gcactgctactg 295
           | |||||||||||||||||||| |||||||||||||||          ||||||||| ||
Sbjct: 210 tacagaggatgggctggaaagatggctcagccactaag-----caaaagcactgctattg 156

                                            
Query: 296 tgaaggaccagggtcgtgataccagcacccaca 328
           ||||||||||| || ||||||||||||||||||
Sbjct: 155 tgaaggaccagagttgtgataccagcacccaca 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)