BAC Information

Click to search

BAC

Clone NameMSMg01-124I10
Chromosome14 (Build37)
Map Location 22,020,891 - 22,021,293
singlet/doubletsinglet
Overlap geneAdk
Upstream geneLOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124I10.T7 (MSMg01no124_i10.b1)MSMg01-124I10.TJ (MSMg01no124_i10.g1)
ACCAG333857AG333858
length1,2911,285
length of high quality
(start - end)
419 (31 - 449)341 (122 - 462)
definitionCHROMAT_FILE: MSMg01no124_i10.b1 PHD_FILE: MSMg01no124_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:44 2005CHROMAT_FILE: MSMg01no124_i10.g1 PHD_FILE: MSMg01no124_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTTTATCTCTCCCCATCACTCTAAGATCTTAAATTCATGACTGGCACGTT
TGACTCAGCCTTTACTGAATGTATATTTTCAATGTTTTAAACATGAAGAA
TAACAAAACATAGACTTAGCACCAAGTGGTATTACTCCCTGGTATCTTTT
GGTGCTTCTTCCTCACCTGAATGAAAGGAAATAGTCTTTAATTTTGTGTA
CATCCTAAATTTTAAGAACTTGACTTAATATAGACATGGCAGACACTCCA
TAATCTATTCAAAAGTTGTAATTCCATGTCATTTTCTATTATAGATATAA
ACAACCATGACCATTGTAAATTTGTAGTATTTTTATCCCCTCCAAAAGAA
ATCCCAAGGCTTAAGAGATGGGTTAGTCAGTAAAATCTTTACTGTGGAAT
TTTTTTTTACCCCCCCCCCAGTCCCTAACACTGACCGGAAAACAAAAGGT
ATAATCCCAACTATGATGAGCGTTGGATAGGATGGATCCCTCCCAGCTCC
AGGCTCTATGAGATAACCTGTCTCCAAAGATAACTTAACGCGTGCTTAAT
GCTGACTTCCCGCTTTCACACACGTGCACACAACTTGCACACAGGTGTAG
ATACTATGAATAGGTACATGTACGTACAAAAACATGAAGTCCCGTACACT
TTAGCTCTCACTGACCACCTGCCTTGCTCTTCTTCGAAAGTCTGCTACCT
GTGTTTTACAGTCCCCTCCACCACTTATACTCAGAATATATCTGAGCTCC
CTTTTCACCTGTGCTGCGTCCATAGATTACTGGGGATAGGACTGCCATCT
TTTTTGTATTGCTGCTATATGTTTGGGGTTTGTTGGTTGTTGGTTGTTTG
TTTATCCATAACCCCCTTTCTTCTCCTAATCTTTCTTCCTCCCTCTTATC
CCCTTCTCCTCTTTTTTCTCCCTACCTCTCTCCTACTCAATCTTTCTCTT
CCTCTCTCTTTTCTCTTTCCTTTTCTCTATCCTTTCTTTTTATAATTTCC
TCATTTCCTTTATCCTTCCTATCCCTATCATTTTTCCCACTCTTCTTCTT
TATCTCTCACCCGTTATCCTCTTCCACTTATCTCTCCATCTAACTCCTCC
ATACCTTCCTCCTCTCTCCTCCTCTCCCTATCATTTCCTATTCTATTCTT
CTCACCCATCTATCCCTTATTCTCCTCCTCTATTCCTCCCGCTCTCTCTA
CTCCTCCCTATCCCATCCTCTCTCATATCCTTCTCTTCTTA
TCCTTTTTAAGATTGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTTAAGTAGATACTAAAAAATATAAAG
AACTGGGGGAAACCTTTAATAAATATTCCCCCCCACCCCCGAGTCATTGA
GTCAGTAGACAGGCTGATGAATTAAGGTGTGGTAGCCTGGGCTTCTAATC
TTAGTGTCTGGACAGCAGCAGGGAAATTAGGAGTTCAAAGTCATCCTTCA
TACATAACAAGTTTAAAGCCAATCTAGGGCACATGAGTCTCTGTGTCAGA
ACAACAACAAAAAATACAAACAGCCAATAAAGCTCTGAGAAAGTATCCAA
CATCCTTAGCCATCAGGGAAGTGAGGATTGAAACTGCTGAAACTGCCATG
AGAGTCTTTCTCATTGCTGCTACAATGCCCACTTAAGATAACAGAGGAGA
AATGTGGTGGGAAGGTGCTATGGAAGCCAGTGTGGGGTTCCTCATAATCA
AACCAGCACTACCAGATGCCACTGCTATAGAACCCTTGGTCCATACCCAC
AGGGTTCAAAGTTATATCACAGAGATACACACATGAATCTTGCTGTACAA
TTCACAGCAGCTAAGAAACGGATCAAAACATGTCTACTAACATATGAATT
GACAAATAGACCAGACTCAATATATGAAATACTGAATACTTTCTCTTATA
TGAGGAATCTAGATTTAAATATACTTGTGCTTGTCTGTGTGTGCATGTGT
GTACGGGTCAGGAACTGGAATGAGAGGAGGACTATGGGAGGGAGACAGAA
GGAAGAGATCTTAAGTCAGAGGACAACTCTGGATTCCAGGGGTTGACTCA
GGTTGTAAGGCTTTCCCAGTTAATGGTTTTTATCTGAAGGCCGTAGACAG
ACTTGATTCTGCAGGGTGTGTTTCCCATAGGTCCCCCTTCTTGCATTCGC
GGAATGCTTCCACCATTCTGTGGGAGCAGGGGCCTTCTTTACTCTGGCCA
CCCCTTCTACCGTATCTTTCCCGCCAACCCTATTCGGAACATAAAATGGG
AAGGTTAACCCGGAATTTCTAATATGAAAACAATGTTTTTTGGCACATAA
TTCCCAAAAATTTTTGGTGCCATATCGGNAAATTCAAATTTTAGGGAGGG
CTCGACCTTCGGTTTACTAAATCAGGGAATACCCCCTTTTCACCCAATTT
CTCCCTTTTCTCACATATCTCACTTTCTTTATTTCTTAAATCCCCTAAGA
TTACCCTTCTATTTTTCTCCTCTCGGTGGGATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_i10.b1 MSMg01no124_i10.b1 CHROMAT_FILE:
MSMg01no124_i10.b1 PHD_FILE: MSMg01no124_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:44 2005
         (419 letters)



>mm_chr14_22020676_22021493
          Length = 818

 Score =  723 bits (374), Expect = 0.0
 Identities = 397/406 (97%), Gaps = 5/406 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctttatctctccccatcactctaagatcttaaattcatgactggcacgtttgact 75
           ||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||
Sbjct: 216 gaattctttatctctccccatcattcaaagctctgaaattcatgactggcacgtttgact 275

                                                                       
Query: 76  cagcctt--tactgaatgtatattttcaatgttttaaacatgaagaataacaaaacatag 133
           |||  ||  |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 276 cag--ttgctactgaatgtatattttc-atgttttaaacatgaagaataacaaaacatag 332

                                                                       
Query: 134 acttagcaccaagtggtattactccctggtatcttttggtgcttcttcctcacctgaatg 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acttagcaccaagtggtattactccctggtatcttttggtgcttcttcctcacctgaatg 392

                                                                       
Query: 194 aaaggaaatagtctttaattttgtgtacatcctaaattttaagaacttgacttaatatag 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaaggaaatagtctttaattttgtgtacatcctaaattttaagaacttgacttaatatag 452

                                                                       
Query: 254 acatggcagacactccataatctattcaaaagttgtaattccatgtcattttctattata 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acatggcagacactccataatctattcaaaagttgtaattccatgtcattttctattata 512

                                                                       
Query: 314 gatataaacaaccatgaccattgtaaatttgtagtatttttatcccctccaaaagaaatc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gatataaacaaccatgaccattgtaaatttgtagtatttttatcccctccaaaagaaatc 572

                                                         
Query: 374 ccaaggcttaagagatgggttagtcagtaaaatctttactgtggaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccaaggcttaagagatgggttagtcagtaaaatctttactgtggaa 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space:   331690
Effective search space used:   331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)