BAC Information

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BAC

Clone NameMSMg01-125G10
Chromosome14 (Build37)
Map Location 49,630,866 - 49,631,265
singlet/doubletsinglet
Overlap genenone
Upstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125G10.T7 (MSMg01no125_g10.b1)MSMg01-125G10.TJ (MSMg01no125_g10.g1)
ACCAG334502AG334503
length696726
length of high quality
(start - end)
401 (51 - 451)398 (73 - 470)
definitionCHROMAT_FILE: MSMg01no125_g10.b1 PHD_FILE: MSMg01no125_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:26 2005CHROMAT_FILE: MSMg01no125_g10.g1 PHD_FILE: MSMg01no125_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCGACACCAGCGCGGAATTCACTTTGTGTACCCCGCTGGCT
TCAAACTCAGAAATTCCCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
GCGTGTGCCACCATGCCCGGCTTAAACTTGGGTGCCTTAATGTGACTGCT
GAATGAACATAGACTCAGAAGGACAATCAGCTTTTATGTTAGTTATAGTA
AGAGCACATGACATCTCCTTATCCATAGGCTAAGAATGAAGACTGGCCCC
TCCATTACTGAAGATGATAGAGTATATAATGAACCCTTATCAAGAATTAT
TAGATAATAGTTGAGTGCATGGATTTTTAGAGTATGACCATGTAATCATT
CCATGACAGTTACTGGCCTCATTTAGGAGTGCCATTGCTGGGAGTCCTTA
GGGTCTTCCTTGCTTTAAAAAGCGCCTGCTAACATAGGTTAAAGGAGGTT
AAATTCAAATTTAGTTTAAAGCACGCAATTTGTGTTATATTCTCTTTGAT
CTTTCCCTTTTTCTTTCCTTCTAAATACTTCCCTATCTGAATACTACCTT
ACTGATACACAGCCTGAATAACAATTACCATTATTGATTCCCAGTAGAGG
ATTTACTGATTGCTTGAGATGCCTGTGTCTACCTTAGTACACCTCCCGAT
GAAGAGATCCCGGTTTCTAAAATGCCACTGTCACTCAGAGCAGTCA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAGAGGGCATTGGATCTCAAAAAGTT
AGTTATGGATGGTGGTGAGTGCCATTTGGGTGCTGAGAATTGGACCCATG
TCCTTTGTGAGAGAAGCCAGCTCTCAAATTTGAGTCATCTCTCCAGACCT
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTTCCTTCCTTCCTTCCTTTT
TCCTTTTTTCTTTTCTTTTTTCTTTTTTTTTTGAGACAAGGTCTTCCTAT
GCAGACTTGGCTGGCCTGGAACTTGGTATGTAAACCTAGACAGATTCTGG
TGTTCTCTTTAGAGGAAAGTCCTTGGTGGTTTAGTGCTCTTAGGAAGAGA
AGCAACTGCATTGTTGTGTTAATATCAGTAACACAACTTCCCTGTTGCGT
GAATGTCACTTTGTAGATCTAGAAGCTGGGCATTCCAAAACAAATTATTT
ATTTATAACGCTCACTTACAGACTTTTTTTTTAAAGAGAACAACCTGCCT
CTTGTCAGAAGGCTGTATCAGACAATGCACCTGATTAATACTTCTGAGGT
CTGCTACTTTGTCTCTGCTCTAACACCCTCTCATAATTTTGTCTTTCACG
GTGACTTCTTGATCTAAATCCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_g10.b1 MSMg01no125_g10.b1 CHROMAT_FILE:
MSMg01no125_g10.b1 PHD_FILE: MSMg01no125_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:26 2005
         (401 letters)



>mm_chr14_49630581_49631380
          Length = 800

 Score =  752 bits (389), Expect = 0.0
 Identities = 398/401 (99%), Gaps = 1/401 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaactcagaaattcccctgcctctgcctcccaagtgctgggattaaaggcgtgtgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcaaactcagaaattcccctgcctctgcctcccaagtgctgggattaaaggcgtgtgcca 626

                                                                       
Query: 61  ccatgcccggcttaaacttgggtgccttaatgtgactgctgaatgaacatagactcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatgcccggcttaaacttgggtgccttaatgtgactgctgaatgaacatagactcagaa 566

                                                                       
Query: 121 ggacaatcagcttttatgttagttatagtaagagcacatgacatctccttatccataggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggacaatcagcttttatgttagttatagtaagagcacatgacatctccttatccataggc 506

                                                                       
Query: 181 taagaatgaagactggcccctccattactgaagatgatagagtatataatgaacccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taagaatgaagactggcccctccattactgaagatgatagagtatataatgaacccttat 446

                                                                       
Query: 241 caagaattattagataatagttgagtgcatggatttttagagtatgaccatgtaatcatt 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 caagaattattagataatagttgagtggatggatttttagagtatgaccatgtaatcatt 386

                                                                       
Query: 301 ccatgacagttactggcctcatttaggagtgccattgctgggagtccttagggtcttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatgacagttactggcctcatttaggagtgccattgctgggagtccttagggtcttcct 326

                                                    
Query: 361 tgctttaaaaagcgcctgctaacataggttaaaggaggtta 401
           |||||||||||| | ||||||||||||||||||||||||||
Sbjct: 325 tgctttaaaaagtg-ctgctaacataggttaaaggaggtta 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 800
Length adjustment: 9
Effective length of query: 392
Effective length of database: 791
Effective search space:   310072
Effective search space used:   310072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)