Query= MSMg01no125_o14.b1 MSMg01no125_o14.b1 CHROMAT_FILE:
MSMg01no125_o14.b1 PHD_FILE: MSMg01no125_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:06 2005
(440 letters)
>mm_chr14_68675851_68676690
Length = 840
Score = 617 bits (319), Expect = 0.0
Identities = 319/319 (100%)
Strand = Plus / Minus
Query: 122 agatgttcggtcagtagaggccttgggtagtttgtatgaagccctgagttcaatcccaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 agatgttcggtcagtagaggccttgggtagtttgtatgaagccctgagttcaatcccaga 781
Query: 182 gccactatggcacatggtgactcaagcccgacatctcggctctcaggagatggaggcaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gccactatggcacatggtgactcaagcccgacatctcggctctcaggagatggaggcaag 721
Query: 242 gagatgtacaagttcaaagtcatccttagctacgttgtgaatttgaggctaccctggact 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagatgtacaagttcaaagtcatccttagctacgttgtgaatttgaggctaccctggact 661
Query: 302 acatgagagcctgtctcaaatttgtttgttttgaatgcccacacagcaagcatcctgtac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acatgagagcctgtctcaaatttgtttgttttgaatgcccacacagcaagcatcctgtac 601
Query: 362 agtctgagcaaagggagctggaggctgtctagtgcattctcgagtccggagagatgcttc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agtctgagcaaagggagctggaggctgtctagtgcattctcgagtccggagagatgcttc 541
Query: 422 taaggactccgtctttgag 440
|||||||||||||||||||
Sbjct: 540 taaggactccgtctttgag 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_o14.g1 MSMg01no125_o14.g1 CHROMAT_FILE:
MSMg01no125_o14.g1 PHD_FILE: MSMg01no125_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:06 2005
(544 letters)
>mm_chr14_68517887_68518830
Length = 944
Score = 1002 bits (518), Expect = 0.0
Identities = 533/544 (97%), Gaps = 11/544 (2%)
Strand = Plus / Plus
Query: 1 acgtatcatgtcatccaaggtctcccatgctgtagcatgtacacagctaaataattttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 acgtatcatgtcatccaaggtctcccatgctgtagcatgtacacagctaaataattttcc 270
Query: 61 atcatacgcgcaggcacacacagacaaacacggggtatacacacacacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atcatacgcgcaggcacacacagacaaacacggggtatacacacacacacacacacacac 330
Query: 121 acacacacacacacacacacacaaatgtgagaaccaaaattaaatgctggaggcaactgt 180
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 acacacacacaca----------aatgtgagaaccaaaattaaatgctggaggcaactgt 380
Query: 181 ttatgcttcattcccctaaacaagtttgtttgacccagctgcacctcccgcacctgactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgcttcattcccctaaacaagtttgtttgacccagctgcacctcccgcacctgactg 440
Query: 241 ggtgtagtctgagatacccatgcaggaagaacatcgggatgtacacttgccttttattgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgtagtctgagatacccatgcaggaagaacatcgggatgtacacttgccttttattgg 500
Query: 301 accgaatgggaaatacaatggccattgcattaagcctctgcaaaatgtaacttgtggcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accgaatgggaaatacaatggccattgcattaagcctctgcaaaatgtaacttgtggcca 560
Query: 361 ttttctgggaacccaggaatggacctggccagagtccatcatactggccaatatttaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttctgggaacccaggaatggacctggccagagtccatcatactggccaatatttaatt 620
Query: 421 aaaacttgcttcaaatttggctcaaaaattgtggaactatctccctctcacaattctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacttgcttcaaatttggctcaaaaattgtggaactatctccctctcacaattctcag 680
Query: 481 catgtatctgaagttcctttttttcaaggctaaataatttttccatcatacatactgtca 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 catgtatctgaagttcctttttttcaaggctaaataatttt-ccatcatacatactgtca 739
Query: 541 ggca 544
||||
Sbjct: 740 ggca 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
