BAC Information

Click to search

BAC

Clone NameMSMg01-126N02
Chromosome14 (Build37)
Map Location 83,452,729 - 83,453,144
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126N02.T7 (MSMg01no126_n02.b1)MSMg01-126N02.TJ (MSMg01no126_n02.g1)
ACCAG335528AG335529
length687708
length of high quality
(start - end)
352 (48 - 399)506 (73 - 578)
definitionCHROMAT_FILE: MSMg01no126_n02.b1 PHD_FILE: MSMg01no126_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:21 2005CHROMAT_FILE: MSMg01no126_n02.g1 PHD_FILE: MSMg01no126_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTCACTTCCTATCATACAAGAAGTTAACATGATGTGTAAAT
ATCTCCCAACTATAGTTAAAAACTTTAAGTTATATATTTTGTTTGCATTA
TGTGTTTACACACACACACATATGCACCTGCACACACCCTATTTTGGTTT
GGTATATTGTTGATTTAAGCCATGCTAAACAGAAAATATCGTTTTATCTT
TGTTTGATGGTAACCAATAAATTTGACTGGACTTGAGTCCAGTCAAACTA
GACTCTAAATATTTACGTTTGTTATGTTTACACATTTAATCTAAAGATTA
GTACTACTTTCAGTCTTGTTAAGAAAAGATTTTTGTTGTTGCTCAGTACA
TTTTGGTGATGGTAAAAATTAATCATAAAGTAATCAGAATGTAAGGAAGT
TGAATTCATAGTCCTAAATTTGGGCATTTATAGCAACCATGCAGGAATCA
GGGAACATCATGATAGAAGACAAGAAAGAATCTAAGAACTGGAGTATAGA
GAGGTGTTCTATAAAGCATTGCCATTGGGCGATGTCAGAGCTGACATGCA
GACTAACTCTCAGGAACAGTGGTTGTGCGAAAAACACCTGTTCTTGATTG
GGCCTATGAAAATTCCTCCCGCATATATATTCGAAAT
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATAT
GTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAG
AAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGA
GCAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTACCCATATCTT
CAAGGCTTTTCCCCACTTTTTCCTCTATAAGTTTCAGTGTCTCTGGTTTT
ATGTGAAGTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTATGC
TGAAAGGACCCTGATATAGCTGTCTCTTGTCAGAGTATGCCTGGGCCTAG
CAAACATAGAAGTGGATGCTCACAGTCGGCTATTGGATGGATCACATGGC
CCCCAATGAAGGAGCTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCA
ACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTT
GACTCTAGCTGCATATGCATCAAAACATGGCCTAGTCGGCCATCACTGGA
AAGAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_n02.b1 MSMg01no126_n02.b1 CHROMAT_FILE:
MSMg01no126_n02.b1 PHD_FILE: MSMg01no126_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:21 2005
         (352 letters)



>mm_chr14_83452594_83453345
          Length = 752

 Score =  491 bits (254), Expect = e-143
 Identities = 342/416 (82%), Gaps = 69/416 (16%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttcacttcctatcatacaagaagttaacatgatgtgtaaatatctcccaact 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gaattcagttcacttggtatcatacaagaagttaacatgatgtgtaaatatctcccaact 195

                                                                       
Query: 65  atagttaaaaactttaagttatatattttgtttgcattatgtgtttacacacacacacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atagttaaaaactttaagttatatattttgtttgcattatgtgtttacacacacacacat 255

                                                                       
Query: 125 atgcacctgcacacaccctattttggtttggtatattgttgatttaagccatgctaaaca 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgcacctgcacacacactattttggtttggtatattgttgatttaagccatgctaaaca 315

                                                                       
Query: 185 gaaaatatcgttttatctttgtttgatggtaaccaataaatttgactggacttgagtcc- 243
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 316 gaaaatattgttttatctttgtttgatggtaatcaataaatttgactggacttgagtccc 375

                                                                       
Query: 244 ---------------------------agt------------------------------ 246
                                      |||                              
Sbjct: 376 actccatgtagaaaacttatccctggtagtggaaactgaatattgacgtactattttatt 435

                                                                       
Query: 247 -----------caaactagactctaaatatttacgtttgttatgtttacacatttaatct 295
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gggcatgttgtcaaactagactctaaatatttacgtttgttatgtttacacatttaatct 495

                                                                   
Query: 296 aaagattagtactactttcagtcttgttaagaaaagatttttgttgttgctcagta 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaagattagtactactttcagtcttgttaagaaaagatttttgttgttgctcagta 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)