BAC Information

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BAC

Clone NameMSMg01-126N11
Chromosome14 (Build37)
Map Location 102,824,886 - 102,825,333
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126N11.T7 (MSMg01no126_n11.b1)MSMg01-126N11.TJ (MSMg01no126_n11.g1)
ACCAG335545AG335546
length701701
length of high quality
(start - end)
451 (44 - 494)414 (76 - 489)
definitionCHROMAT_FILE: MSMg01no126_n11.b1 PHD_FILE: MSMg01no126_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:23 2005CHROMAT_FILE: MSMg01no126_n11.g1 PHD_FILE: MSMg01no126_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCCATGAGGAACCCAATTTCTAAATCATATGAGGAAAAAAAAGAATGGT
TGTGGTCTGAGGGTGCAGGAACAGAAAAACGGACAAAAGGCACAAGGTCA
GGCACAGGAAAGGCAAGTACTAGGAATCGGCACTTAATACTGATGCCTGC
CATTAGCAACGCACATTACATACTTAAAATATGATTGGGGCAGGACCTAC
ATTAAGCACTCTTCCCATAGTAATTTTAAAGCAAGGAGAACAGGAGGAAA
ATAGGAGGAAGCAGATAGGCTATAGCACAGACTGTGCGGAGAGTTTCATA
GTTGTGGAAAAATCTCAGGACTCAGCCAGGCCAGCCGCAGTACACGCTGT
TTTATGTCATTCACACAACAATCTCCAAAAAGAAAAGTATTCTCCAAAAT
CTTTACCTTTTAACAGACTTTAATAAAAAATATTTCCTAAGAAAATTTTA
GTATTTTATATATCAAGCATTCCTTATTCCTGAGGAAACTACATGAAGTT
TGGCTGCCTTCTAAAATATAATATAAAAAAGAAAATCTTCACTCCTAAGA
GGTGCTATGAAGTGTGCATATTGGCCAGCTTCTACTTCAGCCCAATAAGC
TTACTTTTAATTCCCCGCCAGGGGAAACCTCCATTTTCTAACACTAAGGT
C
GAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGATGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAAATGAATT
TATGAAATTCCTAGCCAAATGAATGGACCTGGAGGGCATCATCCTGAGTG
AGGCACCACATTCCCAAGGGAACTCACACAATAGGTACTCACTGAAAAGT
GGATATTTACCCAAAACCTAGGATACTCAAGATTTAAGATACAATTTCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_n11.b1 MSMg01no126_n11.b1 CHROMAT_FILE:
MSMg01no126_n11.b1 PHD_FILE: MSMg01no126_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:23 2005
         (451 letters)



>mm_chr14_102824682_102825533
          Length = 852

 Score =  835 bits (432), Expect = 0.0
 Identities = 444/448 (99%), Gaps = 1/448 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgaggaacccaattt-ctaaatcatatgaggaaaaaaaagaatggttgtggt 63
           ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgaggaactaaattttctaaatcatatgaggaaaaaaaagaatggttgtggt 264

                                                                       
Query: 64  ctgagggtgcaggaacagaaaaacggacaaaaggcacaaggtcaggcacaggaaaggcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgagggtgcaggaacagaaaaacggacaaaaggcacaaggtcaggcacaggaaaggcaa 324

                                                                       
Query: 124 gtactaggaatcggcacttaatactgatgcctgccattagcaacgcacattacatactta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtactaggaatcggcacttaatactgatgcctgccattagcaacgcacattacatactta 384

                                                                       
Query: 184 aaatatgattggggcaggacctacattaagcactcttcccatagtaattttaaagcaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatatgattggggcaggacctacattaagcactcttcccatagtaattttaaagcaagg 444

                                                                       
Query: 244 agaacaggaggaaaataggaggaagcagataggctatagcacagactgtgcggagagttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaacaggaggaaaataggaggaagcagataggctatagcacagactgtgcggagagttt 504

                                                                       
Query: 304 catagttgtggaaaaatctcaggactcagccaggccagccgcagtacacgctgttttatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catagttgtggaaaaatctcaggactcagccaggccagccgcagtacacgctgttttatg 564

                                                                       
Query: 364 tcattcacacaacaatctccaaaaagaaaagtattctccaaaatctttaccttttaacag 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcattcacacagcaatctccaaaaagaaaagtattctccaaaatctttaccttttaacag 624

                                       
Query: 424 actttaataaaaaatatttcctaagaaa 451
           ||||||||||||||||||||||||||||
Sbjct: 625 actttaataaaaaatatttcctaagaaa 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 852
Length adjustment: 10
Effective length of query: 441
Effective length of database: 842
Effective search space:   371322
Effective search space used:   371322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)