BAC Information

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BAC

Clone NameMSMg01-128B14
Chromosome14 (Build37)
Map Location 25,178,430 - 25,179,096
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik
Downstream geneLOC669325, Polr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128B14.T7 (MSMg01no128_b14.b1)MSMg01-128B14.TJ (MSMg01no128_b14.g1)
ACCAG336460AG336461
length732736
length of high quality
(start - end)
667 (64 - 730)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no128_b14.b1 PHD_FILE: MSMg01no128_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:04 2005CHROMAT_FILE: MSMg01no128_b14.g1 PHD_FILE: MSMg01no128_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCTGGTTCCCCCAGATGGCTGTCTTATGATATCCCTTTGCCCACACCTGC
CCACCAGGATTATTTATGCTCTGGTTGCTGGCGATGGCCTGTGAGCTCAC
ACAGCATTCCCTGCAGGGTGTTCGCACCCTTGCAAGGCGTCCTCTGCTGG
TTTCCACACCACTCCCTACTTAACATCACATGAGTCACAGCTATGGAGAT
GTTTGCTGCCAATAAATAGTTTGAAGATGGAGGGGAAAAAAAGAAGAAAT
TAAAAAAGAAAACAATGTAATCCATTACAACAGAAGGTTAATCAAGAAAG
TTATCTAATTTTATGGGTAGATACAGGAATATTTTTACAAGCGTGACACA
CATTTCTGATACACACTTTCAGTCAAGAGGGAATACAGAGAACTTAGCAA
TATGATAGTTCTACAGCAATCAACTAAAATCATCTTTAGAATCTGGAAGC
TTCTTCATGAAGATCAGTAATGAAAAATAGTACCTCTCACTGTAACAACT
CAAGACTTATTGCAATAAGTCAAAACGTAATGTAAAGTTGTACTAATTGA
TAAGGAAAGCTTAAAACTATCAATTTGAATAAGACCTCATTGTCTCCTTG
GAATGTCCAAAAAAATTCACTTTAATAAAGTATTATACTAAGCAATTACA
GCAATTTTATCAAAGACAGTTAACATTAACAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATC
ATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTG
TCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAA
TCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTG
TTGATTTTGTTACCCTCTATCAGCTAGGCGTGGGAGACAAGCTCTCTTCT
CTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCA
GGGAAGGTGTACAGTTACCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTG
AAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAA
GGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTG
GCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCC
CCAGAATCTCTGCGACTCTCTCGCCCGTCCCATACACGGTTGGCACTCTG
TATTCCACATTGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCC
AAGAAGGTTCCCGCCGGCGCCTGTGCCACAACCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_b14.b1 MSMg01no128_b14.b1 CHROMAT_FILE:
MSMg01no128_b14.b1 PHD_FILE: MSMg01no128_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:04 2005
         (667 letters)



>mm_chr14_25178230_25179296
          Length = 1067

 Score = 1282 bits (663), Expect = 0.0
 Identities = 666/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggctgtcttatgatatccctttgcccacacctgcccaccaggattatttatgctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatggctgtcttatgatatccctttgcccacacctgcccaccaggattatttatgctctg 260

                                                                       
Query: 61  gttgctggcgatggcctgtgagctcacacagcattccctgcagggtgttcgcacccttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgctggcgatggcctgtgagctcacacagcattccctgcagggtgttcgcacccttgc 320

                                                                       
Query: 121 aaggcgtcctctgctggtttccacaccactccctacttaacatcacatgagtcacagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggcgtcctctgctggtttccacaccactccctacttaacatcacatgagtcacagcta 380

                                                                       
Query: 181 tggagatgtttgctgccaataaatagtttgaagatggaggggaaaaaaagaagaaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagatgtttgctgccaataaatagtttgaagatggaggggaaaaaaagaagaaattaa 440

                                                                       
Query: 241 aaaagaaaacaatgtaatccattacaacagaaggttaatcaagaaagttatctaatttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagaaaacaatgtaatccattacaacagaaggttaatcaagaaagttatctaatttta 500

                                                                       
Query: 301 tgggtagatacaggaatatttttacaagcgtgacacacatttctgatacacactttcagt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgggtagatacaggaatatttttacaagcgtgacacacatttctgatagacactttcagt 560

                                                                       
Query: 361 caagagggaatacagagaacttagcaatatgatagttctacagcaatcaactaaaatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagagggaatacagagaacttagcaatatgatagttctacagcaatcaactaaaatcat 620

                                                                       
Query: 421 ctttagaatctggaagcttcttcatgaagatcagtaatgaaaaatagtacctctcactgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagaatctggaagcttcttcatgaagatcagtaatgaaaaatagtacctctcactgt 680

                                                                       
Query: 481 aacaactcaagacttattgcaataagtcaaaacgtaatgtaaagttgtactaattgataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaactcaagacttattgcaataagtcaaaacgtaatgtaaagttgtactaattgataa 740

                                                                       
Query: 541 ggaaagcttaaaactatcaatttgaataagacctcattgtctccttggaatgtccaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaaagcttaaaactatcaatttgaataagacctcattgtctccttggaatgtccaaaaa 800

                                                                       
Query: 601 aattcactttaataaagtattatactaagcaattacagcaattttatcaaagacagttaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattcactttaataaagtattatactaagcaattacagcaattttatcaaagacagttaa 860

                  
Query: 661 cattaac 667
           |||||||
Sbjct: 861 cattaac 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)