BAC Information

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BAC

Clone NameMSMg01-131C03
Chromosome14 (Build37)
Map Location 113,373,884 - 113,374,541
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C03.T7 (MSMg01no131_c03.b1)MSMg01-131C03.TJ (MSMg01no131_c03.g1)
ACCAG338713AG338714
length718715
length of high quality
(start - end)
663 (47 - 709)569 (124 - 692)
definitionCHROMAT_FILE: MSMg01no131_c03.b1 PHD_FILE: MSMg01no131_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:15 2005CHROMAT_FILE: MSMg01no131_c03.g1 PHD_FILE: MSMg01no131_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCG
GAATTCTAATGTTACCTAGATAGAATAAAATATACAATACTCAAATCCAA
GTAGAATCTAAACACAAAGACAAAAGACATAAACAAAGAAAACTTTAACT
GATACTGGAAATAAATTCATTCTTTTCATCTACTGTAACTAGCAATACTT
CATGGAACACCAGAAACCATGTATCCAGTAGCAGTGGGATAATTCTTCCA
AAATTCTTGGAGAGAAAAAAAAAAAAAGAAACTGAGCGTCTTATATGCCA
CACAGCTATTTTTCCAAAGTATAAAGTGGAGAGATATCACACCAACAGAA
ACTGTTAAAATTCTAGAATTAGACAGTACAAATATATCAGGATATCTCGA
TAAGCATTCTTCAGGCTAAGCTAAAAGCACACTTCAAAATAAATCATACT
AAATGACAACATAAAATCCTTTAAGAAGTCTCATAAATATAAAAATATAA
TAATCATAGGTCTAGTGGTTGAGATTTATCTTTAATTTTATTTTCATATG
TACATTTTATATTATACAAAATGTTCATACTGATTTTTATAATGGTAGCA
GGTTTTTAGTAGTGTTTTTATCCATTCTCTCATCGTCTGGAGGGAACCGT
GGTGTTAGCCTGGCCTAGTTGCCTTGAGAGACATTTGTCACAGACTTTTC
ATGTTAGAGTCCATGGCT
CCGATGAAGTGCGAGGCCTGGCGGCCGCCTGTTCAAAAAAGGGAGGTGAC
CTATAGAATTTCCGAAAAAATTCTCAGCATAGCAATCGCTAATGACTAAG
AAGTGCTCCATTAAAATGTCCACTGTCCTTAGTTATCAGGGAAATGTAAA
TCAAAACTCTTCTGATATTTCTCTTTACATCCCTCAGGATGTCCAAGAAC
AAAAACTCAAGCAACAGGGCATACTGGCAAGAACAAGGGGATTGCACCTC
TATTTCTGTTCAGAATATAAACTTACACAACTACTTTAGAAATCAATTTG
GCCATTTCTCAGAAAATTGTGTATAGTATTACCTCAAGACCCAGTTATAA
CTCTCCCGGTTATGTACCTACAAGATGTTCTACTATTCTACAAGAACACT
TGCTCATCTGTGTTCACAGCAACTTTATTGTTAAGACTCAGAAACTGAAA
GAATGGGTTAAAAAAAAAAGAAAATATGGTACATTTCCACAATGGAATAT
TACTCATCTGTAAAAACAATGGCCACATGTAATTTGAAGGCAATTGGACA
GAACAACAAAAGAGCATCCTGAGTGAGATAACCAAGACCCAGAAAGACAA
ACCTGGTATGTATTTACTTGTAAGTCTATATTAGCCATAAAGTACAGAAT
AACCATGTTGTAATCCACAGACCCAAAGGAGCTAACTAACAGATAAAGGC
TGAAAGATGATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c03.b1 MSMg01no131_c03.b1 CHROMAT_FILE:
MSMg01no131_c03.b1 PHD_FILE: MSMg01no131_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:15 2005
         (663 letters)



>mm_chr14_113373884_113374952
          Length = 1069

 Score = 1147 bits (593), Expect = 0.0
 Identities = 641/661 (96%), Gaps = 12/661 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatgt--tacctagatagaataaaatatacaatactcaaatccaagtagaatc 62
           ||||| ||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattttaatgtaata--tagatagaataaaatatacaatactcaaatccaagtagaatc 601

                                                                       
Query: 63  taaacacaaagacaaaagacataaacaaagaaaactttaactgatactggaaataaattc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 600 taaacacaaagacaaaagacataaacaaagaaaactttaactgatactggaaatatattc 541

                                                                       
Query: 123 attcttttcatctactgtaactagcaatacttcatggaacaccagaaaccatgtatccag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attcttttcatctactgtaactagcaatacttcatggaacaccagaaaccatgtatccag 481

                                                                       
Query: 183 tagcagtgggataattcttccaaaattcttg--gagagaaaaaaa----aaaaaagaaac 236
           |||||||||||||||||||||||||||||||  ||||||||||||    |||||||||||
Sbjct: 480 tagcagtgggataattcttccaaaattcttggagagagaaaaaaaaaagaaaaaagaaac 421

                                                                       
Query: 237 tgagcgtcttatatgccacacagctatttttccaaagtataaagtggagagatatcacac 296
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgagcatcttatatgccacacagctatttttccaaagtataaagtggagagatatcacac 361

                                                                       
Query: 297 caacagaaactgttaaaattctagaattagacagtacaaatatatcaggatatctcgata 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caacagaaactgttaaaattctagaattagacagtacaaatatatcaggatatctcgata 301

                                                                       
Query: 357 agcattcttcaggctaagctaaaagcacacttcaaaataaatcatactaaatgacaacat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agcattcttcaggctaagctaaaagcacacttcaaaataaatcatactaaatgacaacat 241

                                                                       
Query: 417 aaaatcctttaagaagtctcataaatataaaaatataataatcataggtctagtggttga 476
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 240 aaaatcctttaagaagtctcagaaatataaaaatgtaataatcataggtctagtggttga 181

                                                                       
Query: 477 gatttatctttaa-ttttattttcatatgtacattttatattatacaaaatgttcatact 535
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gatttatctttaatttttatcttcatatgtacattttatattatacaaaatgttcatact 121

                                                                       
Query: 536 gatttttataatggtagcaggtttttagtagtgtttttatccattctctcatcgtctgga 595
           ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||
Sbjct: 120 gatttttataatggtagcaggtttttagtagtgttttt-cccatgctctcatcgtctgga 62

                                                                       
Query: 596 gggaaccgtggtgttagcctggcctagttgccttgagagacatttgtcacagacttttca 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggaaccgtggtgttagcctggcctagttgccttgagagacatttgtcacagacttttca 2

            
Query: 656 t 656
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1069
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1059
Effective search space:   691527
Effective search space used:   691527
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)