BAC Information

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BAC

Clone NameMSMg01-131H15
Chromosome14 (Build37)
Map Location 102,752,450 - 102,752,679
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131H15.T7 (MSMg01no131_h15.b1)MSMg01-131H15.TJ (MSMg01no131_h15.g1)
ACCAG338969AG338970
length733725
length of high quality
(start - end)
229 (132 - 360)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no131_h15.b1 PHD_FILE: MSMg01no131_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:42 2005CHROMAT_FILE: MSMg01no131_h15.g1 PHD_FILE: MSMg01no131_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAATTTTCCTTCAGAAAGCTAGTAACAGCAGAGAACAAAA
GGAGAAAAATGAATAGACGAATTCACCCCTCCCAAGCACCACCCCAACTT
AGGAAGGGTGCTGTCCCGGAGCAGAGAACCCTGTGCTCTGCAGGGCACAA
ATTTCATGCTCCCTGTGTACAGCTGATCATTTGAACTTCCACTCCATGAT
GAGAGCTCCCATTAGTGTTTAAAATGGCTACTCAATCAGCCTATTTGAAG
ATTTTTTACCAATATCTACTCTATTGTTAGATAGATGTGATACATTGTTT
GAAGGCACATTGTTTTTTATGACCCCGCCCCCTATGCTCATGAGATAGGG
AGCTACAAAGATCCTAAACAGGTATCTGTATTTAAGGACCTAGTAGTTTG
AAATAGGAGCAGATATTTAATTAATTGGAAACAAACTTAAGAGAACACCG
AAAACAATAAGGTGGTCACAGACCTTACTCTCCAAATATAGATCATACTC
CCCTGTTTTACATCTGCGATAACAGTGTTGAGTCCACCTTGAAAATGCAA
TTCATCTCTTGAATTCTTGCTTAAAAGTGTTGATTGCCCTGGGGAGAGGA
TTATCACCTCCGGTGAATTTGCGAAGTTTCTGCAGGAGGTTTTCTGGCAC
TTGGGGGACCATCTTGTTTAGGCCCCTGCCCAN
TCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCCCTTATAGCCTGTGGGTATAAGG
ATAACATTTAGAATGTCATTACCACTTATGCTGGCTTAAGAAGCTAGCGA
TAGTAGGTCTTCCTTTGAGGTTGATGACCTCACTAGCCACAGATTGTTGA
CTAGCTTTCCTGTGTCAGGCTGGTAGGTTATTGAGTTATTTTCTCCTCTG
GCTCCTTGCCTAGTGCCTTCTGGTATTAGGGAACTTAGTGCTCAGGGAAG
AGGTTTGGGGTCAGATTCAGTTTGATTCTTCTGAGTCCTGTGCCCAAACT
ATCTGATGTTTTCAGCAACTGCAATCGACCTTGAGTTTCTGGGAGATAGG
TAAGGGCAACAGCAATAGCCTGAATTATTTTGGTGTCTTATTTAAGCACC
AACTGTTACCTATATAGTCCTCTAAGCTTCATCACATCATTGTTCAAGTA
GACTATGCTGAAAATGATGTAAACTCTGATGAGAAGAAAAAGCTGAATCG
ACAGTAACCGAGTTTCTCATTGAGTGTTCCGTGAGCCCTTGTTCCTCCAT
TGAGTTCTCCTATTGTACAAGTGTCCCAAATGAAAGTTCTCCGCCGACCT
GCTTCTTCTGTGGACCCCACTCTACTGATTCCTTTGGCATAGTCCCCCTA
TCCTATTTACTTTTTTTTACTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_h15.b1 MSMg01no131_h15.b1 CHROMAT_FILE:
MSMg01no131_h15.b1 PHD_FILE: MSMg01no131_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:42 2005
         (229 letters)



>mm_chr14_102752250_102752879
          Length = 630

 Score =  398 bits (206), Expect = e-115
 Identities = 224/230 (97%), Gaps = 1/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagcaccaccccaacttaggaagggtgctgtcccggagcagagaaccctgtgctctgc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagcaccaccccaacttaggaagggcgctgtcccggagcagagaaccctgtgctctgc 260

                                                                       
Query: 61  agggcacaaatttcatgctccctgtgtacagctgatcatttgaacttccactccatgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agggcacaaatttcatgctccctgtgtacagctgatcatttgaacctccactccatgatg 320

                                                                       
Query: 121 agagctcccattagtgtttaaaatggctactcaatcagcctatttgaagattt-tttacc 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 321 acagctcccattagtgtttaaaatggctactcaatcagcctatttgaagattcatttacc 380

                                                             
Query: 180 aatatctactctattgttagatagatgtgatacattgtttgaaggcacat 229
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aatatctactctattgttggatagatgtgatacattgtttgaaggcacat 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 630
Length adjustment: 9
Effective length of query: 220
Effective length of database: 621
Effective search space:   136620
Effective search space used:   136620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)