BAC Information

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BAC

Clone NameMSMg01-132J05
Chromosome14 (Build37)
Map Location 81,184,760 - 81,185,230
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132J05.T7 (MSMg01no132_j05.b1)MSMg01-132J05.TJ (MSMg01no132_j05.g1)
ACCAG339782AG339783
length710705
length of high quality
(start - end)
500 (44 - 543)470 (72 - 541)
definitionCHROMAT_FILE: MSMg01no132_j05.b1 PHD_FILE: MSMg01no132_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:07 2005CHROMAT_FILE: MSMg01no132_j05.g1 PHD_FILE: MSMg01no132_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCTTACCTAAACAATGTACAGCAAACCAATAGCCAAAATCAAAT
TAAATGGAGAAACCCTTGAAGCAATTCCACTAAAATCAGAGACAAGGCTG
CCCACACTCCCTATCTATCCAATAGAGTACTTGAAATTCTAGCTACAGCA
ATAAAACAACAAAAGGAGATCAATGGGGTATAAATTGGAAAGGATGAAGT
CAAAATATCACCGTTCATGGATGATATTATACTAAATATGGGTGACCCCA
AACATTCTACCAGAAATCTCCTGTAGCTAATAAATACCTTCAGCAAGGTG
GTTGGATACAAAATCTGCTCATAGAAATCAGTAAAAAATAAATGACCTGA
AAAAGAAATTAGGGAAACAACATCCTTCGCAATAGCCACAAATAGTATAA
AATATCTTGGTGCAACTCTAAATAAGTGAGTAAAGATCTGTATGACAAGA
ACTTCAAGTCTCTAAAGAAAAAAAAATGAAGAAGAACTCAGAAGATGAAT
AGATCTCCCAAGATCCCATAGGTAGTGAAAATGGCCATCTTAACGAAAGT
AATCTACAGATTCAATACAAGTCCTATCACAATTACAACACAATTTCCGC
AAATATTGAAAGAGCAATTCTCAACTTCATATAGAGAAACAAACGGCCTA
GGATAGGCAA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAGTCAGGAAGCATGTGAAACACAGTGA
AATATCACTAAATGAACCTGACATAATACAGCCCATGGCAGATGGAATAT
GCACCAGGTAAACCAGAAAAGTATTTCTGAGGTCCTAAAATCTAGAGTGG
TGCTTGATGCAGGGAAAGCAGTGGTGAGCGACTTTGGTGGCTAAAGAACT
GTGCTTTTCAGATGCAGCCTTAGGAATCTGGACAACTGATGACACCCAGT
TTTGAAGAAATGTGAAGGTTTTGATGCTTGGTGGAGAAACAGTGGCACTG
TGAGAAAAGAATGGCAACCTGAAAAGGTTTTCTTGGATAGCCGCTACTCT
CAATCTAGACCACAGCCTGAGGACTCAGGCATTGCTTGCATCTCATTGGA
TCAGAGTGAGTTCAGGCATGTGCATTTAACAACAAGATAAGTTTGCTTAC
TTAAGGAGTTTTGGGGACAGGTCACACTATGTATCCCAGGCTAGTCAGGC
TCTCTCTGATTTTAGATCACACTGGCCTTGAACTTTCACAGATCCTGGTC
CTGCCTCTGCATATTTAGTGCCGATATTAAAGTCATGAACCACCATCCCT
AGTCATGAACACGCATGTTCTAGTGTATGGCCCATTGAGAGTATCTCTTG
ACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_j05.g1 MSMg01no132_j05.g1 CHROMAT_FILE:
MSMg01no132_j05.g1 PHD_FILE: MSMg01no132_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:07 2005
         (470 letters)



>mm_chr14_81184560_81185430
          Length = 871

 Score =  857 bits (443), Expect = 0.0
 Identities = 464/471 (98%), Gaps = 1/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtcaggaagcatgtgaaacacagtgaaatatcactaaatgaacctgacataatacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagtcaggaagcatgtgaaacacagtgaaatatcactaaatgaacctgacataatacag 260

                                                                       
Query: 61  cccatggcagatggaatatgcaccaggtaaaccagaaaagtatttctgaggtcctaaaat 120
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 261 cccatggcagatggaatatgcaccaggtaagccagaaaagtatttctgagttcctaaaat 320

                                                                       
Query: 121 ctagagtggtgcttgatgcagggaaagcagtggtgagcgactttggtggctaaagaactg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ctagagtggtgcttgatgcagggaaagcagtggtgagcggctttggtggctaaagaactg 380

                                                                       
Query: 181 tgcttttcagatgcagccttaggaatctggacaactgatgacacccagttttgaagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttttcagatgcagccttaggaatctggacaactgatgacacccagttttgaagaaat 440

                                                                       
Query: 241 gtgaaggttttgatgcttggtggagaaacagtggcactgtgagaaaag-aatggcaacct 299
           |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gtgaaggcattgatgcttggtggagaaacagtggcactgtgagaaaaggaatggcaacct 500

                                                                       
Query: 300 gaaaaggttttcttggatagccgctactctcaatctagaccacagcctgaggactcaggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaaggttttcttggatagccgctactctcaatctagaccacagcctgaggactcaggc 560

                                                                       
Query: 360 attgcttgcatctcattggatcagagtgagttcaggcatgtgcatttaacaacaagataa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgcttgcatctcattggatcagagtgagttcaggcatgtgcatttaacaacaagataa 620

                                                              
Query: 420 gtttgcttacttaaggagttttggggacaggtcacactatgtatcccaggc 470
           ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttgtttacttaaggagttttggggacaggtcacactatgtatcccaggc 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space:   396060
Effective search space used:   396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)