BAC Information

Click to search

BAC

Clone NameMSMg01-132K11
Chromosome14 (Build37)
Map Location 54,674,185 - 54,674,842
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132K11.T7 (MSMg01no132_k11.b1)MSMg01-132K11.TJ (MSMg01no132_k11.g1)
ACCAG339837AG339838
length736729
length of high quality
(start - end)		653 (74 - 726)658 (70 - 727)
definitionCHROMAT_FILE: MSMg01no132_k11.b1 PHD_FILE: MSMg01no132_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:13 2005CHROMAT_FILE: MSMg01no132_k11.g1 PHD_FILE: MSMg01no132_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGG
AATTCAAGGCCCATTCCCAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAACTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTATCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTGGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGT
CAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGATAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA
ACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGA

TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCTGGAGCAAGAAGCTCTTACAAAATGAA
TCCTAAAAATCTTTGACCAGACCCTTCCCTAGTTCCCCTCTGGATTGCTA
GAAGACATAAAGAGTCCCAGGTACACGGAGCTCCGCAGGGAACCTCGGCA
CTCACTCCAGGCCCTGTTGCTAACTGTACTGCCACCTCTTTGAGAAAATT
CCGGCTGATTCTGGAAGACAAGAGTTCACACCGGGCCAGCGAGAGAACAA
GCGCCTCCGGGTGGATTGCGAGTGGAGCCTTGGCACTTTCTACTCACGGT
GAAGCAGAAGGTATCATGAGCTTGGGAGGGGTACTGTTCCTTTGTGGGAC
CATCATCACGAGAGAGAATATGGCAAAGGAAATGGAGTCTTAAGGGCGAC
TCGGCCAACGATGTCCTTGAGTTTTTCCGAGGAAGAGAGCTTTGATCTGC
TCTTGTTGAGCGTATCCTTTATCCTAGGCAGCACCAGTTCTCTCAGATGG
TCCTGAAGCTGCAGAATGGACAGATTGGACAAGTGAGTCGATGGATGGGC
AACCCTGGAGAAATTAGGGAAAAGGCAACTCAGAAGTTAGGTAGCTCTGG
CCTCCGTCAGTAGAGGTCAGATGAAGAACAGATTTTCCACTAGACCCCAT
GCTAATGTCTTTTAAATATATTTCTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_k11.g1 MSMg01no132_k11.g1 CHROMAT_FILE:
MSMg01no132_k11.g1 PHD_FILE: MSMg01no132_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:13 2005
         (658 letters)



>mm_chr14_54673985_54675042
          Length = 1058

 Score = 1272 bits (658), Expect = 0.0
 Identities = 658/658 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctggagcaagaagctcttacaaaatgaatcctaaaaatctttgaccagacccttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tttctggagcaagaagctcttacaaaatgaatcctaaaaatctttgaccagacccttccc 799

                                                                       
Query: 61  tagttcccctctggattgctagaagacataaagagtcccaggtacacggagctccgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tagttcccctctggattgctagaagacataaagagtcccaggtacacggagctccgcagg 739

                                                                       
Query: 121 gaacctcggcactcactccaggccctgttgctaactgtactgccacctctttgagaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaacctcggcactcactccaggccctgttgctaactgtactgccacctctttgagaaaat 679

                                                                       
Query: 181 tccggctgattctggaagacaagagttcacaccgggccagcgagagaacaagcgcctccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tccggctgattctggaagacaagagttcacaccgggccagcgagagaacaagcgcctccg 619

                                                                       
Query: 241 ggtggattgcgagtggagccttggcactttctactcacggtgaagcagaaggtatcatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggtggattgcgagtggagccttggcactttctactcacggtgaagcagaaggtatcatga 559

                                                                       
Query: 301 gcttgggaggggtactgttcctttgtgggaccatcatcacgagagagaatatggcaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcttgggaggggtactgttcctttgtgggaccatcatcacgagagagaatatggcaaagg 499

                                                                       
Query: 361 aaatggagtcttaagggcgactcggccaacgatgtccttgagtttttccgaggaagagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaatggagtcttaagggcgactcggccaacgatgtccttgagtttttccgaggaagagag 439

                                                                       
Query: 421 ctttgatctgctcttgttgagcgtatcctttatcctaggcagcaccagttctctcagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctttgatctgctcttgttgagcgtatcctttatcctaggcagcaccagttctctcagatg 379

                                                                       
Query: 481 gtcctgaagctgcagaatggacagattggacaagtgagtcgatggatgggcaaccctgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtcctgaagctgcagaatggacagattggacaagtgagtcgatggatgggcaaccctgga 319

                                                                       
Query: 541 gaaattagggaaaaggcaactcagaagttaggtagctctggcctccgtcagtagaggtca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaaattagggaaaaggcaactcagaagttaggtagctctggcctccgtcagtagaggtca 259

                                                                     
Query: 601 gatgaagaacagattttccactagaccccatgctaatgtcttttaaatatatttcttt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatgaagaacagattttccactagaccccatgctaatgtcttttaaatatatttcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |