BAC Information

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BAC

Clone NameMSMg01-132N20
Chromosome14 (Build37)
Map Location 69,979,310 - 69,979,601
singlet/doubletsinglet
Overlap geneEntpd4
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik
Downstream geneLoxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132N20.T7 (MSMg01no132_n20.b1)MSMg01-132N20.TJ (MSMg01no132_n20.g1)
ACCAG339993AG339994
length710683
length of high quality
(start - end)		340 (371 - 710)601 (74 - 674)
definitionCHROMAT_FILE: MSMg01no132_n20.b1 PHD_FILE: MSMg01no132_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:30 2005CHROMAT_FILE: MSMg01no132_n20.g1 PHD_FILE: MSMg01no132_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTGTTCTGGAAGTGGATTGGAGGCTGGTAGACGCCATTGAGGGAAGTCTG
GGTCTCATTGGTTTTCCTCATGAAAGGCTGCAGGGTCTCTCGACACAGGT
CAAAGTCTCCTGTCCCCCGAAGGTACAGGGTCTGCCCGTTTTGCTGGATC
TCATCTTTAATGTCCAGAGGCAAGCAGGGATCCAGTAGTGGAGCATCAGG
AGTCAGACCAGTCTGTTTACCCAGGAGCCTGTGGCACAAAGAACCATTTA
CCATGAGACCCATGCCACATACACTGCTTTGGACAAGTGGCTGCAAACCA
GTGTTCTCCTAACGTGCCTCCCACAGAATTGAGTGTGGGAATACAAAGGG
TTCCAAACAAAGTTAGTAAAATTGTCATACAACCCTCTTGCAGAGATCCA
CAACTGCATACATAAATTAGCATGCTGAGTCCAGTTAAACAAGGAGTGAG
ATGACCTGACTTGACAGTGGAAGTGATCTAGTATCGGATACTATGGACTC
CCAGGTCTGCCTGTGTTGGGTCCTGTGGACTCCCAGGTCTGCCTGTGTTG
GGTCCTGTGGACTCCCAGGTCTGCCTGTGTTGGGTCCTGTGGACTCCCAG
GTCTGATTGTTAGGAGTTGAACCCTGATGGAGTCACTTGCCCTCACTGAC
AGTCTTTTCT

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGCACATGCTAAAAGCCATAGCTAGT
GTAGAAAGCAAATTCAAGGAAGGCCCTGAACTTAAAATTAATTTTCTTAA
TTTTGTTTTTTTATGTATTTTTATTGGATATTTTATTTATTTGCATTTCA
AATGTTATCCCCTTTCTCTGTTTCCCCTCCACAAACCCCATCCCATCTCC
CTTCCCTGCTTCTATGAGGGTGTTCCCTCACCCACCCACACGCTCCCCAC
CTCACCACCCTAGCATTCCCCTACACTGGGGAATCGAGCCTTCACAGGAC
CAAGGGCCTCCTACTGATAAGGCCCTCCTCTGCTACATATGCAGCTGGAG
TCATGGGTACTCTTTGGTTGGTAGTTTAGTCTCTAGGAGCTTGGGGAGGT
CTGGTTGGTTGATATTGTTTTTCTTCCTATGAGACTGCAAAGCCGTTTAG
CTCCTACAATCCTTCCCCTAACTCCTCCATTGGGTTCCCCATGCTCAGTC
TGATGGTTGGCTGCAAGCATCCAAATCTGTATTGGTCAGGCTCTAGCAGA
ACCTCTCAGGAGACAACTATATCAGGCTCCTGCCAGCAAGCACTTCTTGG
CATCAGCAATAGTGTCTGCTGTATATGGGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_n20.b1 MSMg01no132_n20.b1 CHROMAT_FILE:
MSMg01no132_n20.b1 PHD_FILE: MSMg01no132_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:30 2005
         (340 letters)



>mm_chr14_69979048_69979788
          Length = 741

 Score =  522 bits (270), Expect = e-152
 Identities = 284/292 (97%), Gaps = 7/292 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacagaattgagtgtgggaatacaaagggttccaaacaaagttagtaaaattgtcatac 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ccacagaattgagggtgggaatacaaagggttccaaacaaagttagtaaaattgtcatac 495

                                                                       
Query: 61  aa------ccctcttgcagagatccacaactgcatacataaattagcatgctgagtccag 114
           ||      ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aattttgtccctcttgcagagatccacaactgcatacataaattagcatgctgagtccag 435

                                                                       
Query: 115 ttaaacaaggagtgagatgacctgacttgacagtggaagtgat-ctagtatcggatacta 173
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 ttaaacaaggagtgagatgacctgacttgacagtggaagtgatgctagtatcggatacta 375

                                                                       
Query: 174 tggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctgcctgtgttgggt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctgcctgtgttgggt 315

                                                               
Query: 234 cctgtggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctgtggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctg 263



 Score =  315 bits (163), Expect = 2e-90
 Identities = 166/167 (99%)
 Strand = Plus / Minus

                                                                       
Query: 174 tggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctgcctgtgttgggt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctgcctgtgttgggt 123

                                                                       
Query: 234 cctgtggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctgattgttag 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 122 cctgtggactcccaggtctgcctgtgttgggtcctgtggactcccaggtctgactgttag 63

                                                          
Query: 294 gagttgaaccctgatggagtcacttgccctcactgacagtcttttct 340
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gagttgaaccctgatggagtcacttgccctcactgacagtcttttct 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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