Query= MSMg01no133_o16.b1 MSMg01no133_o16.b1 CHROMAT_FILE:
MSMg01no133_o16.b1 PHD_FILE: MSMg01no133_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:51 2005
(293 letters)
>mm_chr14_75657239_75657931
Length = 693
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Plus
Query: 1 ccacttttttgtgaatgcgtctgatgtcgacagtgtcaaagcgcatttacccgtgagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ccacttttttgtgaatgcgtctgatgtcgacagtgtcaaagcgcatttaaatgtgagcag 260
Query: 61 aattccatttaagtacgtatcctttactatgtgtattcagaacctatgataagcacctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattccatttaagtacgtatcctttactatgtgtattcagaacctatgataagcacctac 320
Query: 121 cgtgtctttgactgagaaacagtatagttggtttgtgggaaaatggcgtgcattaaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 cgtgtctttgactgagaaacagtatagttggtttgtgggaaaatggcgtgcatcaaaaat 380
Query: 181 ggcggggcagcttctgggacaggctggtgatgagacctgagacccaattcagtaattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcggggcagcttctgggacaggctggtgatgagacctgagacccaattcagtaattcaa 440
Query: 241 tgacaagtggtttaacatcttaccacttcagtcggaattaagacacagtg 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaagtggtttaacatcttaccacttcagtcggaattaagacacagtg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_o16.g1 MSMg01no133_o16.g1 CHROMAT_FILE:
MSMg01no133_o16.g1 PHD_FILE: MSMg01no133_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:52 2005
(613 letters)
>mm_chr14_75846484_75847496
Length = 1013
Score = 1038 bits (537), Expect = 0.0
Identities = 576/591 (97%), Gaps = 6/591 (1%)
Strand = Plus / Minus
Query: 27 actgctggaagtttatctagcacgttaacttagatacagaagttgatagtaaacagctct 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 actgctggaagtttatctagcacgttaacttagatacagaagttgatagtaaacagctct 954
Query: 87 tattgacaggctctgacaccagctcaagatcatttgggctcttttgtttgtttatctttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tattgacaggctctgacaccagctcaagatcatttgggctcttttgtttgtttatctttc 894
Query: 147 ttcagacagggtcttgttctgttgtccaggttgatctgaaactcactagatagcccaagc 206
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 893 ttcagacagggtcttgttctgttgtccaggttgatctgaaactcactaggtagcccaagc 834
Query: 207 tgtccttgacctcagggctatccttctgtctcagtctccttagtgctggaattacaggca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgtccttgacctcagggctatccttctgtctcagtctccttagtgctggaattacaggca 774
Query: 267 acgggtgtgggccataatgcccagcataatttaggctgcttttctgcaatcttccatctc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 acgggtgtgggccataatgcccagcataatttaggctgcttttctgcaatcttccatctc 714
Query: 327 tccacaaacacatgttctcgtcagtcatggcaaagctgtctgcaggcccctgaataccca 386
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 713 tccacaaacacatgttctcgtcagtcatggctaagctgtctgcaggcccctgaataccca 654
Query: 387 ggtagcttcctcccagaatggtggtttacacctgcagaagatgcctccagataggcacac 446
|||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||
Sbjct: 653 ggtagcttcctcccagaatgttgatttatacctgcagaagatgcctccagataagcacac 594
Query: 447 ggctggaggagagcacttggagaagtaaacacaagaggagatcagtagcttgagagaagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggctggaggagagcacttggagaagtaaacacaagaggagatcagtagcttgagagaagg 534
Query: 507 aaattctaattgcaagaatctcctctgtgggacagaaacagc---c-cgggtaaacagat 562
|||||||||| | ||||||||||||||||||||||||||||| | | | ||||||||
Sbjct: 533 aaattctaatcgaaagaatctcctctgtgggacagaaacagctttcacag--aaacagat 476
Query: 563 ggctttcacagaagtcctctagcttcaactaccatgtttcaggaaaatggc 613
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggctttcacagaagtcctctagcttcaactaccatgtttcaggaaaatggc 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
