Query= MSMg01no134_g17.b1 MSMg01no134_g17.b1 CHROMAT_FILE:
MSMg01no134_g17.b1 PHD_FILE: MSMg01no134_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:48 2005
(764 letters)
>mm_chr14_96419440_96420604
Length = 1165
Score = 1433 bits (741), Expect = 0.0
Identities = 759/765 (99%), Gaps = 1/765 (0%)
Strand = Plus / Plus
Query: 1 cgaagggcatcagctccagtaagagatcctccctttaaaaaatatctatgaaagaaatag 60
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 201 cgaagggcatcagctccagtaagagatcctgtcattaaaaaatatctatgaaagaaatag 260
Query: 61 aagccattgacacagtcctctgacctttaaatgcctttgtacacacagataagtgcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccattgacacagtcctctgacctttaaatgcctttgtacacacagataagtgcatct 320
Query: 121 gtggacccacatgcatgtaataaacaaacattcatgcaacacacatggatacacacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggacccacatgcatgtaataaacaaacattcatgcaacacacatggatacacacacac 380
Query: 181 tcataaaacatacttgtacacacaaaagaagtagaaatataatgctctttgaaccagatt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tcataaaacatacttgtacacacaaaagaagtagaaatataacgctctttgaaccagatt 440
Query: 241 aacttagtattgacttaaagatctttatttcacctctttcgaacaacagttccttgaatt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aacttagtattgacttaaagatctttatttcacctctttcgaagaacagttccttgaatt 500
Query: 301 caaatacctatcttcctgtgtt-taatggtaaaaggaaaggctcattatctttagaagtt 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatacctatcttcctgtgttctaatggtaaaaggaaaggctcattatctttagaagtt 560
Query: 360 ctgttccagattgtatgaaatatagcataccttatacaaactgattacagaaaggaataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttccagattgtatgaaatatagcataccttatacaaactgattacagaaaggaataa 620
Query: 420 ttttaactacatggaagaatcacacaaataaaaacaaagtagtaaacattaattttaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttaactacatggaagaatcacacaaataaaaacaaagtagtaaacattaattttaaac 680
Query: 480 acttaaacataatatagagaacttgattaattcctaagatatacatttactctagaaaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttaaacataatatagagaacttgattaattcctaagatatacatttactctagaaaat 740
Query: 540 attgatctccttatataaaaacaaaaagcagatcactcaatcaaaccaaggtgattttaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgatctccttatataaaaacaaaaagcagatcactcaatcaaaccaaggtgattttaa 800
Query: 600 ttaaagcagaaactattcaagaagcttctttgagaaacagtatctataagctcttaaggt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaaagcagaaactattcaagaagcttctttgagaaacagtatctataagctcttaaggt 860
Query: 660 aatatctttttctaatcaactgatttatttgtttccattccaaatgctgcctgcctcctt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aatatctttttctaatcaactgatttatttgtttccattccaaatgctgcctgcctcctt 920
Query: 720 gtccctccttcacataaccctcctccctttcagctctgcctctga 764
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtccctccttcacataaccctcctccctttcagctctgcctctga 965
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1165
Length adjustment: 10
Effective length of query: 754
Effective length of database: 1155
Effective search space: 870870
Effective search space used: 870870
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_g17.g1 MSMg01no134_g17.g1 CHROMAT_FILE:
MSMg01no134_g17.g1 PHD_FILE: MSMg01no134_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:48 2005
(822 letters)
>mm_chr14_96561084_96562309
Length = 1226
Score = 1423 bits (736), Expect = 0.0
Identities = 795/816 (97%), Gaps = 4/816 (0%)
Strand = Plus / Minus
Query: 11 caaatgaggtaactggaagagag--aatgatgtacatgctcacatgtcattaaatgtgag 68
||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct: 1026 caaatgaggtaactggaagagagacaattatgtaaatgctcacatgtcattaaatgtgag 967
Query: 69 aatttatttactctaaaaagaaatattttgcatacaaaatatatttatctggatgctttc 128
|||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 966 aatttatttattctaaaaagaaatatttcacatacaaaatatatttatctggttgctttc 907
Query: 129 aaattgtaaacaaatgaggaagaatacacttagatttcaagtattttagattaaaaatcg 188
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aaattgtaaacaaatgaggaaaaatacacttagatttcaagtattttagattaaaaatcg 847
Query: 189 ttatcactcctgattccttaacagcatcgtggatttagttatagatctttggaaataatt 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ttatcactcctgattccttaacagcatcgtggatttagttatagatctttggaaataata 787
Query: 249 ctccagctctgaaatccattgatgatggtgaaaatcatctgcaatttcatttattccact 308
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctctagttcggaaatccattgatgatggtgaaaatcatctgcaatttcatttattccact 727
Query: 309 aatcatcctttcattcattaaaggaaatggaaaagtaaaacatgaaaagatgtttttctc 368
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 726 aatcatcctttcattcattaaaggaaatggaaaagtaaaacatgaaaggatgtttttctc 667
Query: 369 tgctatttctatatattgactgaaagtaaacatgaaatcacatgataattataatatcgt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgctatttctatatattgactgaaagtaaacatgaaatcacatgataattataatatcgt 607
Query: 429 aagaaaaagccttgtgtgttcctaatgcaagggaatgaaaaacagtatttagcaaataca 488
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atgaaaaagccttgtgtgtttctaatgcaagggaatgaaaaacagtatttagcaaataca 547
Query: 489 atagcttaggtgttattctcacaacaattgaatttataatagctttgtcgacacattcta 548
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 546 atagcttaggtgttattctcacaacaattgaatttataatagctttgtggacacattcta 487
Query: 549 ttaacctcttaatttttattaagagaaaatgtatcagaaattctcatttcctaaattagt 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttaacctcttaatttttattaagagaaaatgtatcagaaattctcatttcctaaattagg 427
Query: 609 ggtttatctgtcacacataataaatagaatttggatcatatattcctacttctctttcct 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggtttatctgtcacacataataaatagaatttggatcatatattcctacttctctttcct 367
Query: 669 attgttttcttctgcatgcagtattacttttcacttacctaggtaaaagaaggtttgttt 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attgttttcttctgcatgcagtattacttttcacttacctaggtaaaagaaggtttgttt 307
Query: 729 tattttttaacagcatcacccattatctcttattcccactatga--ctaactgttgggat 786
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 306 tattttttaacagcatcaccccttatctcttattcccactatgaacctaactgttgggat 247
Query: 787 taaactaaaataagcatggtacaattatgatgacag 822
||||||||||||||||||||||||||||||||||||
Sbjct: 246 taaactaaaataagcatggtacaattatgatgacag 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 822
Length of database: 1226
Length adjustment: 10
Effective length of query: 812
Effective length of database: 1216
Effective search space: 987392
Effective search space used: 987392
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
