BAC Information

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BAC

Clone NameMSMg01-136A17
Chromosome14 (Build37)
Map Location 117,176,942 - 117,330,340
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136A17.T7 (MSMg01no136_a17.b1)MSMg01-136A17.TJ (MSMg01no136_a17.g1)
ACCAG342350AG342351
length689687
length of high quality
(start - end)		635 (55 - 689)607 (81 - 687)
definitionCHROMAT_FILE: MSMg01no136_a17.b1 PHD_FILE: MSMg01no136_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:18 2005CHROMAT_FILE: MSMg01no136_a17.g1 PHD_FILE: MSMg01no136_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,176,942 - 117,177,572)(117,329,734 - 117,330,340)
sequence
ATCCGTNNCTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTATATTTCCCTATGTTGCAATGCAGCCGTAAGAG
GATGAGACTCTGGGTTTCATGTCTTCAACCTCCATCATGAATTCACATCA
GGATCAAACATCCCAACTACCCTTCATTTGTTTCACAGAAATGTGTGAAG
TATCAGTTGACATTTTCATCAGATGTTAGCCACTTGCCAGTGTTTGATTA
TGGGTGCTTAGAGGTGAGAGTCTCCAACGCTCCACAGGCACATCATTCCA
GGACCTATCAGTGACTTTTCATGGCTAGACAGAGTCATGAGAGGACCTAA
ATGAATCAGTTCCTGAAGCTTAGAACCAGTCGGCTCACTTTCCCTCAAGA
TGTAGCTCTTCTAATAATATCCTGGGGCCAAAATATGCACTACAGAGTGT
TCTCAGGGAAAAAACAAATTAAAGGGATGTTCCTGTAAGTTGAGATGGAT
TCCAGGTTTGGTCATATGCTTTTGTTTTTGTTTCTTACTCACTTGTCATC
TTTCACATGGCCCCACTCTCGGTCACCCTCTCCCACAATCCTTTCTCCCC
TCCCCTTCTCATCTGAGCAGTTGCGCTACTGGGTATCCCCAACCGTTACA
CTTGAAGTCTCTGCAAGTCTAAGTTCATCCTCTCCCACT

CCCCCCNNCACATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATATGTACATACTTGAAG
CTAAAATAAGGACTTAGAGCACCAGATCACCAGAATATGGGGGGCGGGGA
AGGAATCCTAGTTTCACCATAGATCTTGACATAGCTAATTGACAAATTTG
CATAAAAAGACAGAGACATTTTAATGCATTCTTAATGTTCAACTGTGCCC
CAACTCCAGACATACCTGAGAGAGATAAAGTACATGTTAAAAATGGTTGG
TTTTAAATTTTGTCCCAGTCAGTGGAAATAGGACTTTGCTCCAGCTTCTA
CCCTATGGGTAGCAATCTATTGTAAACTTTGTTTGGCTAACCCAATATTC
CAGGTTTTGGACTAAGCTAATGCTCTAGTAGAGCCAGTACACAGAAAGAA
ACCAATGTATGTGCTTTATAGAACCATATAAATACAATAAAAATGAGTCA
GGAAATGTAGAGATGTGTTATTAAGTGGTAGTGGTAGAGGGTGACCAATT
CCCAGGAAGCTAAAATCAAAATTCAAGGTATTTGGGGAATGGTGTTGCAA
CTCAATATAAATTCAGCACACATAACTTTGTAAGAATATATAGATGGATG
TATTGGCCAACAACACATATAAAAGGGGTAAAGATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_a17.b1 MSMg01no136_a17.b1 CHROMAT_FILE:
MSMg01no136_a17.b1 PHD_FILE: MSMg01no136_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:18 2005
         (635 letters)



>mm_chr14_117176738_117177772
          Length = 1035

 Score = 1158 bits (599), Expect = 0.0
 Identities = 623/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtatatttccctatgttgcaatgcagccgtaagaggatgagactctgggtttc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtatatttccttatgttgcaatgcagccgtaagaggatgagactctgggtttc 264

                                                                       
Query: 65  atgtcttcaacctccatcatgaattcacatcaggatcaaacatcccaactacccttcatt 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtcttcaacctccatcatgaattcacatcaggatcaaacatcccaactacccttcatt 324

                                                                       
Query: 125 tgtttcacagaaatgtgtgaagtatcagttgacattttcatcagatgttagccacttgcc 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 tgtttcacagaaatgtgtgaagtatcagttgacattgtcatcagatgttagccacttgcc 384

                                                                       
Query: 185 agtgtttgattatgggtgcttagaggtgagagtctccaacgctccacaggcacatcattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 agtgtttgattatgggtgcttagaggtgagagtctccaacgctccacagacacatcattc 444

                                                                       
Query: 245 caggacctatcagtgacttttcatggctagacagagtcatgagaggacctaaatgaatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggacctatcagtgacttttcatggctagacagagtcatgagaggacctaaatgaatca 504

                                                                       
Query: 305 gttcctgaagcttagaaccagtcggctcactttccctcaagatgtagctcttctaataat 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttcctgaagctcagaaccagtcggctcactttccctcaagatgtagctcttctaataat 564

                                                                       
Query: 365 atcctggggccaaaatatgcactacagagtgttctcagggaaaaaacaaattaaagggat 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 atcctggggccaaaatatgcactacacagtgttctcagggaaaaaacaaattaaagggat 624

                                                                       
Query: 425 gttcctgtaagttgagatggattccaggtttggtcatatgcttttgtttttgtttcttac 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttcctgtaagttgagatagattccaggtttggtcatatgcttttgtttttgtttcttac 684

                                                                       
Query: 485 tcacttgtcatctttcacatggccccactctcggtcaccctctcccacaatcctttctcc 544
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcacttgtcatctttcatatggccccactctcggtcaccctctcccacaatcctttctcc 744

                                                                       
Query: 545 cctccccttctcatctgagcagttgcgctactgggtatccccaaccgttacacttgaagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctccccttctcatctgagcagttgcgctactgggtatccccaaccgttacacttgaagt 804

                                          
Query: 605 ctctgcaagtctaagttcatcctctcccact 635
           |||||||||||||||||||||||||||||||
Sbjct: 805 ctctgcaagtctaagttcatcctctcccact 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_a17.g1 MSMg01no136_a17.g1 CHROMAT_FILE:
MSMg01no136_a17.g1 PHD_FILE: MSMg01no136_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:18 2005
         (607 letters)



>mm_chr14_117329534_117330540
          Length = 1007

 Score = 1151 bits (595), Expect = 0.0
 Identities = 604/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatatgtacatacttgaagctaaaataaggacttagagcaccagatcaccagaatatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acatatgtacatacttgaagctaaaataaggacttagagcaccagatcaccagaatatgg 748

                                                                       
Query: 61  ggggcggggaaggaatcctagtttcaccatagatcttgacatagctaattgacaaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggggcggggaaggaatcctagtttcaccatagatcttgacatagctaattgacaaatttg 688

                                                                       
Query: 121 cataaaaagacagagacattttaatgcattcttaatgttcaactgtgccccaactccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cataaaaagacagagacattttaatgcattcttaatgttcaactgtgccccaactccaga 628

                                                                       
Query: 181 catacctgagagagataaagtacatgttaaaaatggttggttttaaattttgtcccagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 catacctgagagagataaagtacatgttaaaaatggttggttttaaattttgtcccagtc 568

                                                                       
Query: 241 agtggaaataggactttgctccagcttctaccctatgggtagcaatctattgtaaacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtggaaataggactttgctccagcttctaccctatgggtagcaatctattgtaaacttt 508

                                                                       
Query: 301 gtttggctaacccaatattccaggttttggactaagctaatgctctagtagagccagtac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 507 gtttggctaacccaatattccaggttttggactaagctaatgctctagtagacccagtac 448

                                                                       
Query: 361 acagaaagaaaccaatgtatgtgctttatagaaccatataaatacaataaaaatgagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acagaaagaaaccaatgtatgtgctttatagaaccatataaatacaataaaaatgagtca 388

                                                                       
Query: 421 ggaaatgtagagatgtgttattaagtggtagtggtagagggtgaccaattcccaggaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaaatgtagagatgtgttattaagtggtagtggtagagggtgaccaattcccaggaagc 328

                                                                       
Query: 481 taaaatcaaaattcaaggtatttggggaatggtgttgcaactcaatataaattcagcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaaatcaaaattcaaggtatttggggaatggtgttgcaactcaatataaattcagcaca 268

                                                                       
Query: 541 cataactttgtaagaatatatagatggatgtattggccaacaacacatataaaaggggta 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 267 cataactttgtaagaatatatagatggatgtattggccaacaacacatataagagggtta 208

                  
Query: 601 aagatta 607
           |||||||
Sbjct: 207 aagatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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