Query= MSMg01no139_k16.b1 MSMg01no139_k16.b1 CHROMAT_FILE:
MSMg01no139_k16.b1 PHD_FILE: MSMg01no139_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:08 2005
(505 letters)
>mm_chr14_19218758_19219662
Length = 905
Score = 924 bits (478), Expect = 0.0
Identities = 495/502 (98%), Gaps = 4/502 (0%)
Strand = Plus / Plus
Query: 6 ggaattcctggatcc--ctgctgttcttcagtgcacactggactcctgaacacacaagta 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcctgga--cagctgctgttcttcagtgcacactggactcctgaacacacaagta 263
Query: 64 aaggagcacgtgagcagcaagacagatggtcgtgctggtgagagcagagcaactcgcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaggagcacgtgagcagcaagacagatggtcgtgctggtgagagcagagcaactcgcaaa 323
Query: 124 aagcaaagttcccttctctgtccttctatgtgggctgccagcagaaggtgtggctaaatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcaaagttcccttctctgtccttctatgtgggctgccagcagaaggtgtggctaaatt 383
Query: 184 tagggtggatcttcctgattaaggttaagacaattcctcataggatcattcacaagctta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagggtggatcttcctgattaaggttaagacaattcctcataggatcattcacaagctta 443
Query: 244 catgttaattgattggagttaaccatcacagtgtcaaaatttagatttttgtagatctgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgttaattgattggagttaaccatcacagtgtcaaaatttagatttttgtagatctgt 503
Query: 304 attttgaaatttttgactagcatttacatttcatgtaaaatatttcatagcccagatcaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attttgaaatttttgactagcatttacatttcatgtaaaatatttcatagcccagatcaa 563
Query: 364 agctggtctgagctatcagttttcaatttctcaaaacaatctcctatggacgggcttctt 423
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct: 564 agctggtctgagctatcagtttttaatctctcaaaacaatctcctatggacaggcttctt 623
Query: 424 cacaggagatgtacaggcagggtgctgatttttccagcttaactagaagccggctttctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacaggagatgtacaggcagggtgctgatttttccagcttaactagaagccggctttctg 683
Query: 484 gacttgaggaaagagggagggg 505
||||||||||||||||||||||
Sbjct: 684 gacttgaggaaagagggagggg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_k16.g1 MSMg01no139_k16.g1 CHROMAT_FILE:
MSMg01no139_k16.g1 PHD_FILE: MSMg01no139_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:08 2005
(637 letters)
>mm_chr14_19415715_19416755
Length = 1041
Score = 1091 bits (564), Expect = 0.0
Identities = 573/578 (99%), Gaps = 4/578 (0%)
Strand = Plus / Minus
Query: 63 gaattcactaaggaattgggcaaaagtatcagagttgtgcatctggccattgttagtgga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gaattcactaaggaattgggcaaaagtatcagagttgtgcatctggccattgttagtgga 982
Query: 123 agacccagaaaacacaaacggtgagagaatgttcagtgggacttgcctacaatccctgaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 agacccagaaaacacaaacggtgagagaatgttcagtgggacttgcctacaatccctgaa 922
Query: 183 cataggggatgaggcaggaaaattgttagtttgcagctagcctaagctacataatgagcc 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cataggggctgaggcaggaaaattgttagtttgcagctagcctaagctacataatgagcc 862
Query: 243 tgtgtaggagaaaaaataaaaaggaaagaagaaattggaaaagagacacaaattctcagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgtgtaggagaaaaaataaaaaggaaagaagaaattggaaaagagacacaaattctcagt 802
Query: 303 ataaacaaagaccttttgctcactctgctctgtctccccagagctgctcatggggcagct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataaacaaagaccttttgctcactctgctctgtctccccagagctgctcatggggcagct 742
Query: 363 cactgccttgagaatgtcttgagtcaagaacatttgcgttggattttaatggatgtgttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactgccttgagaatgtcttgagtcaagaacatttgcgttggattttaatggatgtgttt 682
Query: 423 ttcgttactctttaaatgaaggcaattaaagatggtgctgatttaaaaccttgagttgtt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcgttactctttaaatgaaggcaattaaagatggtgctgatttaaaaccttgagttgtt 622
Query: 483 aattctttccatgctaggattaaaggaaatttc----tttaagtaaagaattatgtattt 538
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 aattctttccatgctaggattaaaggaaatttctttttttaagtaaagaattatgtattt 562
Query: 539 taagtcaaaggtctgtttttcgtaattaatatatctgagctaacactatttttcttagct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagtcaaaggtctgtttttcgtaattaatatatctgagctaacactatttttcttagct 502
Query: 599 aatatatctaacttagcatgctaattttttccttattg 636
||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatatctaacttagcatgctaattttttccttattg 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1041
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1031
Effective search space: 646437
Effective search space used: 646437
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
