BAC Information

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BAC

Clone NameMSMg01-140A22
Chromosome14 (Build37)
Map Location 98,915,920 - 98,916,429
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140A22.T7 (MSMg01no140_a22.b1)MSMg01-140A22.TJ (MSMg01no140_a22.g1)
ACCAG345303AG345304
length721718
length of high quality
(start - end)		512 (41 - 552)592 (72 - 663)
definitionCHROMAT_FILE: MSMg01no140_a22.b1 PHD_FILE: MSMg01no140_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:39 2005CHROMAT_FILE: MSMg01no140_a22.g1 PHD_FILE: MSMg01no140_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGAATT
CCATGTGCACTTCCCATAGGAAAAAAACATAAAAATATTTATATCTCATT
TGCTCTTGAATAAGCTTCATTCTTTCCTGGGGTGCTTGTCTATTCCACAC
CCATTGCCTATTACCAGTCACAAAGAATTGGCACTGAGCTATTCTGTCAA
GTGTGAGTCTGGGAACTTTACACCTGCCAGTTCAGACTGATTTTCAATAT
TGTGTGAAAATGCCAAGGAATGACCTGCCACTCCATGTCTGTGACATGAG
TCCTGTTCATGTTGCTCAATGGTTTGTGGCGTCTATCTTGGAGAGATTAT
TTTTCTATGGTTCAGTACCTCTCACCATCCCAGGCAGTAATTACCTTGTA
TGCCAGGCACCGGATAATAATAGAGGAACTAAGCAGAAAGCGTGTCTTCA
GTTAGTAATTATTTGTGAATATGTGAACACAAATAATTACTTACCATTTT
TTGTGTGTTTGTGTGCGTGTGTGTGTATTTTTGTATGTGTGTTTGTGTAT
GTGTGTGCACTTTTTCCTTCCCTTTTTTTTTTTTCCCCCCTCCCTTTCTT
CATTTTTTTCTTACCCTTTTTCATTTTTTCTTCATTTTTTTTCTCCCTTT
TTCCCATTTCCCTTTCCCCCTTTTTCCCCCTTTTTTCTTTTTTCACTTTA
CTACCCCCCCTTTTTCCCCCA

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAACTGAGCTATCATATGGATGCTAGGA
ACTAAAGTTGTGTCCCCCGTAAAAGCAGAAAGTGCTCTTAACCACTGAGC
CATCACCCTAGCTCCTAGATCTCTCTAATTTGGCTCAGATGATATAGAGA
TATAGAGGGATTTTTAATCCAGCAACATGGCTACCCTGATCATATCCAAC
GACCTTCAAAGTCTGTGTGATCCAGATGGAAGGCAGACATGTCACACACC
TTTAGTCCCCCAAATGACCTCTAATTGAGAAGCAGATAAAGTGATGAATC
AGAGAAAGATTTGCTAGAATTAGCCAGAGATAGGACATGCTCAACTCTCA
TGAAAAGGAGACAGGAAGAGAAATTTCTTAAGAGCAGCAAAGGGAGCACC
TGTCAGTCAACTGGGAGTCAGGGCAGTGAGTGCAGTGCACTGGACTTGAG
TTTGTTAGTGAGTTCAGCGTAGGTCAGCAGAGGCTGTTGAAGCCAGAGAA
TAAGAAGGAGCCAGATGGTTACAGCAGATTTCCAGAGTTAGTTTGAGGCC
AAGCATAGTAATTCAGTGAGAAGCCAGAAAAGCTGAGTTGAATCAACCAG
CCAGTGTTCAGAAAGACCTGGCAAGTGTGAGCATATTCACCAATAGGCCT
CTGAGATGACAATTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_a22.b1 MSMg01no140_a22.b1 CHROMAT_FILE:
MSMg01no140_a22.b1 PHD_FILE: MSMg01no140_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:39 2005
         (512 letters)



>mm_chr14_98915715_98916629
          Length = 915

 Score =  951 bits (492), Expect = 0.0
 Identities = 505/512 (98%), Gaps = 7/512 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccatgtgcacttc---ccataggaaaaaaa--cataaaaatatttatatctcatt 60
           ||||||||||||||||     ||||||||||||||  |||||||||||||||||||||||
Sbjct: 206 gaattccatgtgcact--aagccataggaaaaaaaaacataaaaatatttatatctcatt 263

                                                                       
Query: 61  tgctcttgaataagcttcattctttcctggggtgcttgtctattccacacccattgccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctcttgaataagcttcattctttcctggggtgcttgtctattccacacccattgccta 323

                                                                       
Query: 121 ttaccagtcacaaagaattggcactgagctattctgtcaagtgtgagtctgggaacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaccagtcacaaagaattggcactgagctattctgtcaagtgtgagtctgggaacttta 383

                                                                       
Query: 181 cacctgccagttcagactgattttcaatattgtgtgaaaatgccaaggaatgacctgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacctgccagttcagactgattttcaatattgtgtgaaaatgccaaggaatgacctgcca 443

                                                                       
Query: 241 ctccatgtctgtgacatgagtcctgttcatgttgctcaatggtttgtggcgtctatcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctccatgtctgtgacatgagtcctgttcatgttgctcaatggtttgtggcgtctatcttg 503

                                                                       
Query: 301 gagagattatttttctatggttcagtacctctcaccatcccaggcagtaattaccttgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagagattatttttctatggttcagtacctctcaccatcccaggcagtaattaccttgta 563

                                                                       
Query: 361 tgccaggcaccggataataatagaggaactaagcagaaagcgtgtcttcagttagtaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgccaggcaccggataataatagaggaactaagcagaaagcgtgtcttcagttagtaatt 623

                                                                       
Query: 421 atttgtgaatatgtgaacacaaataattacttaccattttttgtgtgtttgtgtgcgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttgtgaatatgtgaacacaaataattacttaccattttttgtgtgtttgtgtgcgtgt 683

                                           
Query: 481 gtgtgtatttttgtatgtgtgtttgtgtatgt 512
           ||||||||||||||||||||||||||||||||
Sbjct: 684 gtgtgtatttttgtatgtgtgtttgtgtatgt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 915
Length adjustment: 10
Effective length of query: 502
Effective length of database: 905
Effective search space:   454310
Effective search space used:   454310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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