BAC Information

Click to search

BAC

Clone NameMSMg01-141G02
Chromosome14 (Build37)
Map Location 97,725,693 - 97,850,994
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G02.T7 (MSMg01no141_g02.b1)MSMg01-141G02.TJ (MSMg01no141_g02.g1)
ACCAG346268AG346269
length1,2371,209
length of high quality
(start - end)		595 (145 - 739)711 (93 - 803)
definitionCHROMAT_FILE: MSMg01no141_g02.b1 PHD_FILE: MSMg01no141_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:42 2005CHROMAT_FILE: MSMg01no141_g02.g1 PHD_FILE: MSMg01no141_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,725,693 - 97,726,287)(97,850,481 - 97,850,994)
sequence
CCCTTCCTTNTNNNTTACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGAACCAAAGCAAATAACCGATAAAAGTCTGTAAAGAT
GTTAGAAAGGTAACCAATAACACTTATAATAACTTAGTTACCCCTTGATC
AATCTGGGAGCATGGAAAGATTTTTCTTTATACCAGTATCACCATCAATA
CACAAATGATATGCTAGATGTCAATGTTCCTAGGAATATGATGTCAATAG
ATAGAAACGATTTTTGGGTCCATCATGTTATTATATGTAACCACAACCAC
ATGTACTGCCCATCTTTGAACAAAATATGACTGTCACTAACAGACATATA
TAGTACTGCTATATTATTTTACACATTTATTAATTAGCAAATATTTATTA
AATACCTAGTATAATAATTTTGGAGGTCATATCCACAAAATCAAATAAAT
GACTATTGTGATTTGAATATGAAATGATTCCCTGGGCTTATGTATCTTAA
CATATGATGCCCAGGTGGTTACAGTATATGAAACTTCAGAGTATTGCATG
CTCACTAGAGGAAGTAAGTCATGGGGATGGCTCCACATATTCTCTCTGTG
CTTCTTGAATGTGGATGCAATATGACCAATCTGTTTACTCGTCCTGTGGC
CATACTTTCCTCTCCCAATTTCCATGTTACCCATCACAGTGAACTCTTTC
TTTCTGTAATTTTAAGTTGTAAAAAATAGTTTCTCCCCAGTTGTATATGT
CAAGGTATTTTATCAAAGCAATATAAAACAATCCTGTACATTTGTGTTCA
TATATATTCAGAAATGCTTTTTCTACTTTCTTAAAATATCCTTAGATTGT
TAGCCTGCATTTACCTAGAATGAGAAATATGTTTAATTTCGTTGTGAATA
TGAAATTTTTCTAACCCCATTGTGATGTTGCAGGAAGTAATAAGGTCCAA
TATAATTGGAAAATTATTATAATTTGTTCCTTTCTTTTAATCATGTTTAT
TTATTATCCCTTTCTTTTTAAATTGTTTTTTTCTCTAATTTTGATTCGTT
ATAACTTTCCCTTCATAGGTACTCTAATTAATACCTCTTGGCCTATCCAT
CTTTTTGTCTTCCATTCTTTTGCGCAATCTACTTTTCATCTTTCCGTCTC
TAATCAAAATTTTAATTTCTCCAACTCTCCTTTCATACTTGTGTTAGTCA
GCTTTTTCTCTCTTTTCACTCTCCTTCTCTTATCTCG

NCCCTTCTTTTNNNNAAACATGGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTTAAGCCTTGTACAAAA
GGATGGCTAAAAGCAAAAAGTCCCGAAACATATTTTTTTAACGCACAGCC
CTCTGTAGTAACCAGCTGTCTTGATTTACTTTCTAGCCTCCAGATCTGTA
AAACAATGAAAATGAGTTTCTCCAACATTGTTATATGGACCCTTGTGGAT
TTTTGAATATGTTCAGACCAAGGAGGTGTGACAGACAGTATTACAGTATT
AGAAAGTGTGGCATACATACATATATACACATACACATACACATACACAT
ACACATACATATACATATGTGTGTGTGTATATGATATTTAGTCATTGGTA
AATACATATGATGTAATTATCCATTGGTATGTAAATGTATTGATATATTT
CAATAAATATTATGTATTTATCTGTATATATTTATATGTTACAATATTAT
AATTCTACATTAGCATTGTTGAGACTCAGATAAGAGTGCTGTTTGGGAGG
CTAAGTCCTCAACCCGATCTTTAGTACTGGAATCTTTTGCTGCCTTTCAC
TTTTTTCTTATCTATCATCTAAAAATATTTTTTCTAATGTGCAAACCTAT
GTTTATGTAGCCTCTATTACTCATATATTGTGTTAATCTACTAAAAATTG
TTCAAAAATCTTCCCTTTTTCTATTTATAGTCTAACCATTGGCTAAAACA
AGACAAAAAAAAGAAGACAAAATCACCAAGAAAAAACACTCCACCCTGCA
AAAAAAGAAACAAACAAAGAAAACCCCAAAGTCATGTTGTACTTGATAGC
TTTCAACTCTAAAGTTCTGTTTCTTAGTGTAATAGTGCTAGGTATTGTAA
CTGGTAAACCTTTGGCGTTCTGTGACCTAGCCCGTAAAAATTTTCATCTT
ACTATTGTACAGTCCAGTGTATGAACTGGCACTACTCTGAAAAAGGAACT
ACTCTGGCAAAAACTCTGAAAGCTTCCCTAAGGCTTGGCCCCCAAATACC
CTGGCCCTGCAAGTTTTTTTTTTGAAATGCAACCCAAAAAAAAACATTTC
CTTTGGAAATTTTAACGGGAAAACCCTAAAATTTTCTCCCAAAAAAATTC
CCCCTCCTTTATTGCCCGCAAAAAAAAGCCTTTGTTTTAAAACTTTTTTC
CCTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g02.b1 MSMg01no141_g02.b1 CHROMAT_FILE:
MSMg01no141_g02.b1 PHD_FILE: MSMg01no141_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:42 2005
         (595 letters)



>mm_chr14_97725493_97726487
          Length = 995

 Score = 1143 bits (591), Expect = 0.0
 Identities = 594/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatcaatctgggagcatggaaagatttttctttataccagtatcaccatcaatacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatcaatctgggagcatggaaagatttttctttataccagtatcaccatcaatacaca 260

                                                                       
Query: 61  aatgatatgctagatgtcaatgttcctaggaatatgatgtcaatagatagaaacgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgatatgctagatgtcaatgttcctaggaatatgatgtcaatagatagaaacgatttt 320

                                                                       
Query: 121 tgggtccatcatgttattatatgtaaccacaaccacatgtactgcccatctttgaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtccatcatgttattatatgtaaccacaaccacatgtactgcccatctttgaacaaa 380

                                                                       
Query: 181 atatgactgtcactaacagacatatatagtactgctatattattttacacatttattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgactgtcactaacagacatatatagtactgctatattattttacacatttattaat 440

                                                                       
Query: 241 tagcaaatatttattaaatacctagtataataattttggaggtcatatccacaaaatcaa 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tagcaaatatttattaaatacctagtataagaattttggaggtcatatccacaaaatcaa 500

                                                                       
Query: 301 ataaatgactattgtgatttgaatatgaaatgattccctgggcttatgtatcttaacata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaatgactattgtgatttgaatatgaaatgattccctgggcttatgtatcttaacata 560

                                                                       
Query: 361 tgatgcccaggtggttacagtatatgaaacttcagagtattgcatgctcactagaggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgcccaggtggttacagtatatgaaacttcagagtattgcatgctcactagaggaag 620

                                                                       
Query: 421 taagtcatggggatggctccacatattctctctgtgcttcttgaatgtggatgcaatatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagtcatggggatggctccacatattctctctgtgcttcttgaatgtggatgcaatatg 680

                                                                       
Query: 481 accaatctgtttactcgtcctgtggccatactttcctctcccaatttccatgttacccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaatctgtttactcgtcctgtggccatactttcctctcccaatttccatgttacccat 740

                                                                  
Query: 541 cacagtgaactctttctttctgtaattttaagttgtaaaaaatagtttctcccca 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacagtgaactctttctttctgtaattttaagttgtaaaaaatagtttctcccca 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no141_g02.g1 MSMg01no141_g02.g1 CHROMAT_FILE:
MSMg01no141_g02.g1 PHD_FILE: MSMg01no141_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:43 2005
         (711 letters)



>mm_chr14_97849884_97850994
          Length = 1111

 Score =  994 bits (514), Expect = 0.0
 Identities = 514/514 (100%)
 Strand = Plus / Minus

                                                                        
Query: 198  attacagtattagaaagtgtggcatacatacatatatacacatacacatacacatacaca 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 attacagtattagaaagtgtggcatacatacatatatacacatacacatacacatacaca 1052

                                                                        
Query: 258  tacacatacatatacatatgtgtgtgtgtatatgatatttagtcattggtaaatacatat 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 tacacatacatatacatatgtgtgtgtgtatatgatatttagtcattggtaaatacatat 992

                                                                        
Query: 318  gatgtaattatccattggtatgtaaatgtattgatatatttcaataaatattatgtattt 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  gatgtaattatccattggtatgtaaatgtattgatatatttcaataaatattatgtattt 932

                                                                        
Query: 378  atctgtatatatttatatgttacaatattataattctacattagcattgttgagactcag 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  atctgtatatatttatatgttacaatattataattctacattagcattgttgagactcag 872

                                                                        
Query: 438  ataagagtgctgtttgggaggctaagtcctcaacccgatctttagtactggaatcttttg 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  ataagagtgctgtttgggaggctaagtcctcaacccgatctttagtactggaatcttttg 812

                                                                        
Query: 498  ctgcctttcacttttttcttatctatcatctaaaaatattttttctaatgtgcaaaccta 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  ctgcctttcacttttttcttatctatcatctaaaaatattttttctaatgtgcaaaccta 752

                                                                        
Query: 558  tgtttatgtagcctctattactcatatattgtgttaatctactaaaaattgttcaaaaat 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  tgtttatgtagcctctattactcatatattgtgttaatctactaaaaattgttcaaaaat 692

                                                                        
Query: 618  cttccctttttctatttatagtctaaccattggctaaaacaagacaaaaaaaagaagaca 677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  cttccctttttctatttatagtctaaccattggctaaaacaagacaaaaaaaagaagaca 632

                                              
Query: 678  aaatcaccaagaaaaaacactccaccctgcaaaa 711
            ||||||||||||||||||||||||||||||||||
Sbjct: 631  aaatcaccaagaaaaaacactccaccctgcaaaa 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |