BAC Information

Click to search

BAC

Clone NameMSMg01-141L08
Chromosome14 (Build37)
Map Location 116,574,516 - 116,624,295
singlet/doubletdoublet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141L08.T7 (MSMg01no141_l08.b1)MSMg01-141L08.TJ (MSMg01no141_l08.g1)
ACCAG346513AG346514
length1,2301,242
length of high quality
(start - end)		771 (89 - 859)481 (93 - 573)
definitionCHROMAT_FILE: MSMg01no141_l08.b1 PHD_FILE: MSMg01no141_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:25 2005CHROMAT_FILE: MSMg01no141_l08.g1 PHD_FILE: MSMg01no141_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,623,525 - 116,624,295)(116,574,516 - 116,574,995)
sequence
NCCATATTCTNNNNNGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCATTAGACAACTCTCCCCCTTTTTTGAGCATCTTGAATT
CCAAGAGGAATCACAGCATCCATGGCCTAATAAGTCAACCGCTCCTAGCA
CGTTTCCCTGGATGAGATCTTGTTGACTTGGGTTGGCTGCCACTGTCTCC
TTTCCCTTTGTCCTTGCAGCCGATGGCTTTACAGAAGTTCCATCACACAC
ATTTTTGTGCTGTATTGAGAGGGCGTGGAGATAAATGCATTTTAAGCAGA
CATTTCCCCAGCTCTCTCTTTAATGGTCTCCAATCAGACTTTAATCTTCC
CAAGTCTAAAAATGTCTGTCACGGTGACTTCCTGCTTGCCCACTCAGGGC
ACTGGGTGGCCTCCATTACTTCTCCCTTTCTGTGCTTCCTGCTTCCACTG
ACTTCACAGACTGTCCTATCTAGATAACTCTAACTGATCTCCTTCATGGG
AACATCAGGACACATATGAGTTCAGTTCTAGGACATTTCTAAACACTCTA
CAGTTTCTCCATAGCTGACATCATCCAATTCAATCCTCTGTGTTGCTATA
TTTTACCCTGATCACAAGATTTGATAAATTACCTATGAGTTCCTGGTTTC
TTATGAGATATTTAATGCTTTATTTCTGAAAACTAACTTTTGATATCCTC
ATGCTTCAAACTCTAGTCTCATTTATCTGAATACATGGGGCTAACATTCT
TTAACATTTATAAATTAACTATTTGGTCTGACATTTTAACCCCTACTTTC
AATATGTATCCCCAATTCATCATGCAAGTGTCCATTGCAGGCCCTCTGNA
AAACATGTCTATCTTGTTTCCTGGTAGTATTTTCTAAGACAGATGGTTTA
AGTCACCCATGGCACTGACTCTCAAGCAACTCCAGAGGTGCTAATATCTT
CAAATGGCCATCTCTTGAGATCTCCAACCTCTCAGTCATATTCACTCTAG
GTTCCCTGGCTATCTTAGCCTCCTCCATGTATCCCCCGGGTTTCCAGGAT
TGGAACTTCCGAAAAAAAGGCTAATTTTGGAAAGGAATTTGGGAAAAAAA
ACCCGAAAACCCCCTTAAAATTTTCGGTTTGACCTTCAACGGCATTTTTA
AAAAAATTTTCCCAAACTACTCCCATTTTAAAAACCTTTTTTCCCGGTGT
TTTTTTAACACCCTCCCTTTTATAATAAAA

NNCCATCTTTTTTNTTNACAAGTGAGNCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATATGTCCTGTAATTC
TAGACTTGGGGGTAGAACTGACTTAAGGAACTGATTCAAGCACGTATGTA
TTCAAAGAATATTGAGTCATGCAGAGTCGAAGCATGAGATGATATCCAAC
ACAGATAGAAGCTTCTCTCTGGGGTTAATTTGAGATTCTATAAGAAATTC
TTAAAGCTACATTTAAGCCTGAGAATACTGTATTAATATCTGACACCCGT
TTTAGAAATTCTTCACACTTGACCATATTTTTGATAAAGCTTGGAAGAAA
GACCACATGAAGTTTAAGCAGAAGGAAGACCAGTGTGAATGCTTCAATCC
TACTTAGAAGGGGTAACATAATAATCATGCCAGGTAGAGGTAGGGAGGGA
CACAGGAGGGAGAGTGGTGGTAGGGGAAAAGAGGGGGCAGGATCAGGTAT
GGGAAAAGAAAGGAGAGAAATACAAAGGGTCAGGAAAATGAATGTGTATG
AATATGTAGGAGTGGGGTATGGNTANNTTTTTTTTTTTTTTTTTGTTGTT
TTTTTTTTTTTTGTTTTTTTTTATTTTTTTTTTTTTTTTTGTTTTTTTTT
TTTTTATTTTTTTTTTTTATGTTTTTTTTTTTTTATTTTTTTTTTTTTTT
TTTNTTAGTTAATTTATTTAGTTTTTATTTTTATTGTTATTTTATTTTTT
TTTTTTTTTATTAATTTTATTTTTTTTTTTTTTTGTTTTAATTTTTTTTT
TTTTTTATTTTTAATTTATTTTTTTTTTTTTTTTATTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTATGTTATTATTTTTTTATTTTTTTTATTTNTTA
TTTTTATAATTTTTTTATTTATTTTTATTTTTTTTTTTTTTTTTTTATTT
TATTTTTATTTTATTTTGTTATTANTTGTATTTATTATTATTTGTTTTTT
ATTTTTTTTTTTTTTTTTTTTATTTTTTATTTATTTTTTTTTTATTTTTT
TATGTTATTTATTTATTTTTTTATATATTTTTTTTTTATTAATTTTTTTT
TTGTTTTATTTTTTTTTATTATTATTATTTTTTTTTTTTTTTTTTTTTTT
TTTTATATTTATTTTTATTTATTTATTTATTTAATTTTTTTANTTTTATT
ATATTTTTTTAATATTATTTTTTTTTTTATTTTGTNTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_l08.b1 MSMg01no141_l08.b1 CHROMAT_FILE:
MSMg01no141_l08.b1 PHD_FILE: MSMg01no141_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:25 2005
         (771 letters)



>mm_chr14_116623325_116624495
          Length = 1171

 Score = 1462 bits (756), Expect = 0.0
 Identities = 767/771 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatcttgaattccaagaggaatcacagcatccatggcctaataagtcaaccgctcctag 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 971 gcatcttgaattccaagaggaatcacagcatctatggcctaataagtcaaccgctcctag 912

                                                                       
Query: 61  cacgtttccctggatgagatcttgttgacttgggttggctgccactgtctcctttccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 cacgtttccctggatgagatcttgttgacttgggttggctgccactgtctcctttccctt 852

                                                                       
Query: 121 tgtccttgcagccgatggctttacagaagttccatcacacacatttttgtgctgtattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tgtccttgcagccgatggctttacagaagttccatcacacacatttttgtgctgtattga 792

                                                                       
Query: 181 gagggcgtggagataaatgcattttaagcagacatttccccagctctctctttaatggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gagggcgtggagataaatgcattttaagcagacatttccccagctctctctttaatggtc 732

                                                                       
Query: 241 tccaatcagactttaatcttcccaagtctaaaaatgtctgtcacggtgacttcctgcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tccaatcagactttaatcttcccaagtctaaaaatgtctgtcacggtgacttcctgcttg 672

                                                                       
Query: 301 cccactcagggcactgggtggcctccattacttctccctttctgtgcttcctgcttccac 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 671 cccactcagggcactgggtggcctccattatttctccctttctgtgcttcctgcttccac 612

                                                                       
Query: 361 tgacttcacagactgtcctatctagataactctaactgatctccttcatgggaacatcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgacttcacagactgtcctatctagataactctaactgatctccttcatgggaacatcag 552

                                                                       
Query: 421 gacacatatgagttcagttctaggacatttctaaacactctacagtttctccatagctga 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 551 gacacatatgagttcagttctaggacatttctaaacactctacagtttttccatagctga 492

                                                                       
Query: 481 catcatccaattcaatcctctgtgttgctatattttaccctgatcacaagatttgataaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catcatccaattcaatcctctgtgttgctatattttaccctgatcacaagatttgataaa 432

                                                                       
Query: 541 ttacctatgagttcctggtttcttatgagatatttaatgctttatttctgaaaactaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttacctatgagttcctggtttcttatgagatatttaatgctttatttctgaaaactaact 372

                                                                       
Query: 601 tttgatatcctcatgcttcaaactctagtctcatttatctgaatacatggggctaacatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttgatatcctcatgcttcaaactctagtctcatttatctgaatacatggggctaacatt 312

                                                                       
Query: 661 ctttaacatttataaattaactatttggtctgacattttaacccctactttcaatatgta 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctttaacatttataaattaactatttggtctgacattttaacccctactttcaatatgta 252

                                                              
Query: 721 tccccaattcatcatgcaagtgtccattgcaggccctctgnaaaacatgtc 771
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 251 tccccaattcatcatgcaagtgtccattgcaggccctctggaaaacatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1171
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1161
Effective search space:   883521
Effective search space used:   883521
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no141_l08.g1 MSMg01no141_l08.g1 CHROMAT_FILE:
MSMg01no141_l08.g1 PHD_FILE: MSMg01no141_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:25 2005
         (481 letters)



>mm_chr14_116574316_116575196
          Length = 881

 Score =  897 bits (464), Expect = 0.0
 Identities = 476/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaattctagacttgggggtagaactgacttaaggaactgattcaagcacgtatgtatt 60
           |||||||||||||||||||||||||||||   || |||||||||||||||||||||||||
Sbjct: 201 tgtaattctagacttgggggtagaactgagggaacgaactgattcaagcacgtatgtatt 260

                                                                       
Query: 61  caaagaatattgagtcatgcagagtcgaagcatgagatgatatccaacacagatagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagaatattgagtcatgcagagtcgaagcatgagatgatatccaacacagatagaagc 320

                                                                       
Query: 121 ttctctctggggttaatttgagattctataagaaattcttaaagctacatttaagcctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctctggggttaatttgagattctataagaaattcttaaagctacatttaagcctga 380

                                                                       
Query: 181 gaatactgtattaatatctgacacccgttttagaaattcttcacacttgaccatattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatactgtattaatatctgacacccgttttagaaattcttcacacttgaccatattttt 440

                                                                       
Query: 241 gataaagcttggaagaaagaccacatgaagtttaagcagaaggaagaccagtgtgaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataaagcttggaagaaagaccacatgaagtttaagcagaaggaagaccagtgtgaatgc 500

                                                                       
Query: 301 ttcaatcctacttagaaggggtaacataataatcatgccaggtagaggtagggagggaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaatcctacttagaaggggtaacataataatcatgccaggtagaggtagggagggaca 560

                                                                       
Query: 361 caggagggagagtggtggtaggggaaaagagggggcaggatcaggtatgggaaaagaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggagggagagtggtggtaggggaaaagagggggcaggatcaggtatgggaaaagaaag 620

                                                                       
Query: 421 gagagaaatacaaagggtcaggaaaatgaatgtgtatgaatatgtaggagtggggtatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagaaatacaaagggtcaggaaaatgaatgtgtatgaatatgtaggagtggggtatgg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |