Query= MSMg01no141_m12.b1 MSMg01no141_m12.b1 CHROMAT_FILE:
MSMg01no141_m12.b1 PHD_FILE: MSMg01no141_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:35 2005
(499 letters)
>mm_chr14_105025341_105026239
Length = 899
Score = 814 bits (421), Expect = 0.0
Identities = 479/509 (94%), Gaps = 20/509 (3%)
Strand = Plus / Plus
Query: 1 tgataaatgaaatgtgcttttaacacccctt------ttaaaattgagtgtacccccaag 54
|||||||||||||||||||||||| | ||| ||||||||||| | |||
Sbjct: 201 tgataaatgaaatgtgcttttaac------tcaaaaattagaattgagtgtatgcttaag 254
Query: 55 aataggaagtgaagatatggctgacctttgccccaatcctatcgctagggaggctttgga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aataggaagtgaagatatggctgacctttgccccaatcctatcgctagggaggctttgga 314
Query: 115 cttgaggatgaggtattaggctttcctaccacattaggaaaaatcgtagatatctgaaag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttgaggatgaggtattaggctttcctaccacattaggaaaaatcgtagatatctgaaag 374
Query: 175 atggtagtgtagaaggtgtactctgtcacagagagaaatatgattgctttcaaatattta 234
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 375 atggtagtgtagaaggtgtactctgtcacagagagaaacatgattgctttcaaatattta 434
Query: 235 tgaagtctacttcctgtgccaagcctttactggattcctggaatataatcctgaacacag 294
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 435 tgaagtctacttcctgtgccaagcctttactggattcctggactataatcctgaacacag 494
Query: 295 cacaacacttactgccaaggaacagt----ttttttagttaggacaaataacgtttgtcc 350
|||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 495 cacaacacttactgccaaggaacagtcacatt----agttaggacaaataacgtttgtcc 550
Query: 351 tgtaagatgctaaagtccaatggcttggcatagtataagcttcttcttggtgatgagaga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgtaagatgctaaagtccaatggcttggcatagtataagcttcttcttggtgatgagaga 610
Query: 411 tcttctgtattgttatttgaagggtgagatttcttgcagtgttgttttgctttcttctaa 470
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 611 tcttctgtattgttattccaagggtgggatttcttgcagtgttgttttgctttcttctaa 670
Query: 471 aacttgttgagggatcttcttcttcatcc 499
|||||||||||||||||||||||||||||
Sbjct: 671 aacttgttgagggatcttcttcttcatcc 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_m12.g1 MSMg01no141_m12.g1 CHROMAT_FILE:
MSMg01no141_m12.g1 PHD_FILE: MSMg01no141_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:35 2005
(552 letters)
>mm_chr14_105205362_105206313
Length = 952
Score = 870 bits (450), Expect = 0.0
Identities = 518/552 (93%), Gaps = 18/552 (3%)
Strand = Plus / Minus
Query: 1 ggaccaaacctctgaaactgtaagccagcccctattaaatgttttccttcataagaattg 60
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 ggaccaaacctctgaaattgtaagccagcacctattaaatgttttccttcataagaattg 626
Query: 61 ccttggtcatggtgtctcttcacatcattaaaacccaaaactaagacagaagtctcttaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 625 ccttggtcatggtgtctcttcacatcattaaaacccaaaactaagacagaagtctcatga 566
Query: 121 agaactctctttacacctaccaaaacagctacttacagaacgatcactatgggaagtact 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 agaactctctttacacctaccaaaacagctacttacagaacgattactatgggaagtact 506
Query: 181 ttgcaagataatttagttacaaagttcaaaaaagagaatcttaggaactatatttatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcaagataatttagttacaaagttcaaaaaagagaatcttaggaactatatttatggt 446
Query: 241 tgtaaatcaatagagttatcctgccaaattttttttattattagagaggtgtaagtggat 300
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 445 tgtaaatcaatagagttatcctgccaaacagttcctattattagagaggtgtaagtggat 386
Query: 301 ctggaagaccagcacaggcttctaatcaatctttagaaaggacagggttcagtattcaaa 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggaagaccagcagaggcttctaatcaatctttagaaaggacagggttcagtattcaaa 326
Query: 361 cactgctgtctgtactaaagatataaagtcagatagaagttctttgggcacaatgaagca 420
||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 325 cactgctgtctgtac------------------tagaagttcttcgggcacaatgaagca 284
Query: 421 tttggggttaaaattccaaggtttggatcttgcagccaccattttctcatatgatcattt 480
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 283 cttggggttaaaattccaaggtttggatcttgcatccaccattttctcatgtgatcattt 224
Query: 481 aacctcgtccacttccttgtgtttgacgattaacatgatgatttcagcagctctatagta 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aacctcgtccgcttccttgtgtttgacgattaacatgatgatttcagcagctctatagta 164
Query: 541 tctggctcaagg 552
||||||||||||
Sbjct: 163 tctggctcaagg 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
