Query= MSMg01no141_n05.b1 MSMg01no141_n05.b1 CHROMAT_FILE:
MSMg01no141_n05.b1 PHD_FILE: MSMg01no141_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:40 2005
(754 letters)
>mm_chr14_104831848_104833001
Length = 1154
Score = 1390 bits (719), Expect = 0.0
Identities = 743/751 (98%)
Strand = Plus / Plus
Query: 1 cacattatccaacagcataagatgatgtattaactttctccctgaattcaaaacgtttat 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 cacattatccaacagcataagatgatgtattaacattctccctgaattcaaaacgtttat 260
Query: 61 tgattctttttaaaccttagataatttaactaggttacatttgcattttgtagtataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgattctttttaaaccttagataatttaactaggttacatttgcattatgtagtataaaa 320
Query: 121 taaacattttaaattatttctgctcacatctcagattgagtattgagttcaaaacagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacattttaaattatttctgctcacatctcagattgagtattgagttcaaaacagctc 380
Query: 181 ctctttgcctgaattggtggaacaagggaacctaagttgatcatcaaatatttatggata 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctctttgcctgaattggtggaacaagggaaccgaagttgatcatcaaatatttatggata 440
Query: 241 ttaagtattacatttattcataatcagatctaaaataattttagtagggagatgtgtcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagtattacatttattcataatcagatctaaaataattttagtagggagatgtgtcca 500
Query: 301 atagtaatatcaaattgagagaaattcattaaggattgtgtgttatttaataacaaaata 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 atagtaatatcaaattgagagaaattcattaaggattgtgtgttatttaataacgaaata 560
Query: 361 cgaagcccaacgttacataaaacaaaaagggaaccaactgagatgcttcagggaaagaaa 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 cgaagcccaacgttacataaaacaaaaagggaaccaactgagctgcttcagggaaagaaa 620
Query: 421 aaacttcaatttgttttgctcttttcaactccacttctatccttcttttgaaggaatgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacttcaatttgttttgctcttttcaactccacttctatccttcttttgaaggaatgaa 680
Query: 481 aggttttaccatttctaaaagacaaaatgacctaatttattcctttactaaggaacattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggttttaccatttctaaaagacaaaatgacctaatttattcctttactaaggaacattt 740
Query: 541 aatattgtgtctgtgacaaagcaaaagtactccagggtcttagagacatggaacatcagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatattgtgtctgtgacaaagcaaaagtactccagggtcttagagacatggaacatcagg 800
Query: 601 gttctatcctccatgatccccatcacaatgtaaatgcaaaaacaaaagcacatctagtat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttctatcctccatgatccccatcacaatgtaaatgcaaaaacaaaagcacatctagtat 860
Query: 661 gctgggcgtgtaaacaagacacagcctctgcaatgaaatgaaaactcgctctggctattt 720
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 861 gctgggcgtgtaaacaagacacagcctctgcacggagatgaaaactcgctctggctattt 920
Query: 721 ttctaccaacttaatacaagctaaagtcatc 751
|||||||||||||||||||||||||||||||
Sbjct: 921 ttctaccaacttaatacaagctaaagtcatc 951
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1154
Length adjustment: 10
Effective length of query: 744
Effective length of database: 1144
Effective search space: 851136
Effective search space used: 851136
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_n05.g1 MSMg01no141_n05.g1 CHROMAT_FILE:
MSMg01no141_n05.g1 PHD_FILE: MSMg01no141_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:41 2005
(690 letters)
>mm_chr14_104953908_104954996
Length = 1089
Score = 1029 bits (532), Expect = 0.0
Identities = 656/726 (90%), Gaps = 51/726 (7%)
Strand = Plus / Minus
Query: 1 atatattctgaaatacatttaaattttcatcagccttcactatcaggaataaaaccctgt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1083 atatattctgaaatacatttaaattttcatcagaagtcactatcaggaataaaaccctgt 1024
Query: 61 tgggctggaaagatggctcagtggtcaggagtacatacaactctcacaaaagacctgagt 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1023 tgggctggagagatggctcagtggtcaggagtacatacaactctcacaaaagacctaagt 964
Query: 121 tcagttctcagcagctaacaaccaaaagtcactacagttctaggaatctgatatgttctc 180
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 963 tcagttcccagcaactaacaaccagctgtcactacagttctaggaatctgatatgttctc 904
Query: 181 ctggcctctagtgcacatgt----------------------------------acacac 206
|||||||||||||||||||| ||||||
Sbjct: 903 ctggcctctagtgcacatgtacagacacacacacacacacacacacacacacacacacac 844
Query: 207 acacacagagcaacatattagacacacacacactcacacacacacacacatgcatacaca 266
|||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 843 acacacagagcaacatgttagacacacacacact--------cacacacatgcatacacg 792
Query: 267 tgtacacacaggataggtagataaataaacaacaaacagataaatacaatttctaaagga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgtacacacaggataggtagataaataaacaacaaacagataaatacaatttctaaagga 732
Query: 327 aggaaagtcatcaagcgtttagccagcagctgaggtggctcccttcctgtaattccagtg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aggaaagtcatcaagcgtttagccagcagctgaggtggctcccttcctgtaattccagtg 672
Query: 387 attgaccatcttaaccaacaagcttaaccaagaaggcctaaggccagccttggctgcaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 attgaccatcttaaccaacaagcttaaccaagaaggcctaaggccagccttggctgcaaa 612
Query: 447 gtcagaccatttaaaaatgtaagcagtaagaaaaccaaaaacttaaaagcgttgccctgt 506
||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 611 gtcagaccatttaaaaa-gtaagcagtaagaaaatcaaaaacttaaaagcattgccctgt 553
Query: 507 gagagacacttttattcccaaaaggataaaaataagcgacaaacaatgaggatatcctgg 566
|||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 552 gagagacatttttattcccaaaaggataaagataagcaacaaacaatgaggatatcctgg 493
Query: 567 caaaacacaaactcttaaaaaaaaacaaaacaaaacaaaaaaaaaactagtatctagctg 626
|||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 492 caaaacacaaactctt-aaaaaaaac-aaacaaa--aaaaaaaaaactagtatctagctg 437
Query: 627 ggcagtggtggtgcac--gcctttaatcccagcacttgggaggcagaggcaggcggattt 684
|||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 436 ggcagtggtg--gcacatgcctttaatcccagcacttgggaggaagaggcaggtggattt 379
Query: 685 ctgagt 690
||||||
Sbjct: 378 ctgagt 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space: 733720
Effective search space used: 733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
