BAC Information

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BAC

Clone NameMSMg01-141P05
Chromosome14 (Build37)
Map Location 46,037,583 - 46,201,485
singlet/doubletdoublet
Overlap genePlekhc1, EG382884
Upstream geneEG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1
Downstream geneDdhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141P05.T7 (MSMg01no141_p05.b1)MSMg01-141P05.TJ (MSMg01no141_p05.g1)
ACCAG346689AG346690
length1,2061,249
length of high quality
(start - end)
678 (123 - 800)658 (94 - 751)
definitionCHROMAT_FILE: MSMg01no141_p05.b1 PHD_FILE: MSMg01no141_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:58 2005CHROMAT_FILE: MSMg01no141_p05.g1 PHD_FILE: MSMg01no141_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,200,808 - 46,201,485)(46,037,583 - 46,038,235)
sequence
NCGCTCCTNNNNTCGATTTGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCCATTCTTTGTTGGATCCCTTTAAAGGCCCTCCTAGGNGCTGAA
GGGGAGAAAGTCCTCCGTTAGCTAACCCCCTTCCCCAGCCCTCCCCAGTC
TTGCCTTGAGAGCCCACGGCCCACAGCTCCTCTAGCCTCAGACTGCAGAG
ATACATGTCAAAGGAAAATAACTTAACCCAGTTCACTTGCCACAACATTG
AAAACAAGAAACAAGTTGATCTGATTAATATGCACACACAGTAGTCAGAT
CCTCACAGTGATGTTACTTGTTCCATGAGAGCCCACGGCCCACAGCTCCT
CTAGCCTCAGACTGCAGAGATACATGTCAAAGGAAAATAACTTAACCCAG
TTCACTTGCCTCAACATTGAAAACAAGAAACAAGTTGATCTGATTAATAT
GCACACACAGTAGTCAGATCCTCACAGTGATGTTACTTGTTCCAGCCCTC
ATTAGCTTGAAGGATGCTCTTGTTTGAGTCTAAATCCTGCCAGGACTCAA
CCCCAAGATTGGATTTCCCAGGAGTGCTTGGTCCTTGGTGCGCTGCCAAG
GAGCATTAAAGGTGAGAGGACTCCCTTTCCTACAACATCCCCCAATCCCC
CAATGCTGGCAGACAGACCCTGGGAGCAAAAAGATTTAATTACCTTAAAG
AGTTTGATTTCTTACAAATGCAGAGTACCCTTCCTTCCCATAGTCACATT
CCACATAGAAGATGGGAGAGAGAAATGTGGGTGGTGTGTATGCACACTGA
CCAAAGGGCATGCTATCATCTGTCCTGGGGGAAGAACACATTCCTAGCAT
GTGTGTAGCTCTGGGTATAATTCTCAGCACCCCAAAAGGAAAAGTCAAAA
CTAAACAAAAGGCCCCCTTCCCTTCCCCATATTTTCCTCTCTCTCCTTGT
CCCTCCATTCCCCTTCCTCCCATTTTCTCTCCTTCAAACTTGATTTTCTC
TTCCTATCCCCTCCCACTTTCATCTTTTCTTTTTACCCAGTATTCTACAT
TCTTTTTCCTTTCTATCTATCTTTCTTCTTACGCCCCTTTTCCTTTCTAT
TCTTTTTCTTTTCTCCTCTTCTCCTTCATCATTATTTATCTTCTCTTTCT
CCTCTTTTCTCCTATTATTATCCCTATCTGTCTGTCTTCTTACTTTTCTC
CCTTCT
NCCATCTTTTTNNTAAAGATGGNAGCCGTGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAAGCTGCCAGTGCTG
TGACGAGAGACCACACCTTACCCAAACAAATGAACAAAGAAACCCACAAA
AAAACAACATCAAAACAACAACAACACATGGTTAGATGAAGATTGTTAAC
CCTAGCTAATAGCTAAATGTAGGTGGGTGGCAGGTTCTGTTCCTTGTGGC
TTGTTAATAATGGGTAATAATAGTTATACAGGGGGGTTGGAGAGATGGCT
CCACAGTTAAGAACTCAGGCTGCTCTTCCAAAGGTCCTGAATTTAATCCC
CCAACAACAAATGGTGTCTCACAACCATCTGTATGCCCTCTTCTGGTGTG
CATGAAGACAGAGCATTCTTGTACATAAAATAAGTCTTTAAAAAAAAAAA
AAAAGATGTCCTCTGACATCCACACCTGTGCTTTGATATGTGTCTATCCT
GCCCACCCAACACAATAATAAATAAAAATATTTTTAGATAGTTACACAGA
TTAGATAAATGTAATGGTTTCCAGTACTTGGGACTGAATTTAGGATCTCA
GGCGTGCTCAGCAAGCACCGTGCTTAGACCTGTATCCCCAGCTTGGTCTC
CTCCTTTTAACTTTTCTGGGTGTTTAACTTTTTTCAGAACAAAAACTTTG
GGAAAGACTTTCATTAGTTTTTTTCTTCCCTGTCAAAAACAAGTTACAGT
TATGTAATCCCCCAAAGGGAATCCCTTCCCAAAATATGAATTAGAAATTG
GAGACCATACAAATCTGAGCAGTTTTTCAAGAGAATGTGTTTCTTTTAGA
TCATTGCTCAAGGTTAAACCCAGATCTGAAGCAACCCTTCCCTGACCTTT
GTCATAACAGTTTATTGAAATTTTTCTTTAACCCAAAGCTCCTTGGACCT
TGAACACTCCAAAATTTGCCAAAGAACATTGGTCCTTTCTGAATCTTTAA
CAAAGTTTTTATCATATCGGCCCACACAAGTTTCCTTATAAATAAAAAAC
CTCTTTGGGGGGGTTCGTGGAAAAACTATATTCCCAAAAACGTATTTTTC
CCCCTTGAAAAAGTTTCTCAATTTTCTTTGTGAATAATTAAACCCTTTTT
TTGATTTTAATATTAAACCCCCTAAATACTCGTTTTAAAAATATATTTCT
TATATATCTAGTTGTGTCTCCCCAATATATATCTTTCTTTTTATCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_p05.b1 MSMg01no141_p05.b1 CHROMAT_FILE:
MSMg01no141_p05.b1 PHD_FILE: MSMg01no141_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:58 2005
         (678 letters)



>mm_chr14_46200608_46201685
          Length = 1078

 Score = 1288 bits (666), Expect = 0.0
 Identities = 675/678 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacccccttccccagccctccccagtcttgccttgagagcccacggcccacagctcctc 60
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 taacccccttccatagccctccccagtcttgccttgagagcccacggcccacagctcctc 819

                                                                       
Query: 61  tagcctcagactgcagagatacatgtcaaaggaaaataacttaacccagttcacttgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tagcctcagactgcagagatacatgtcaaaggaaaataacttaacccagttcacttgcca 759

                                                                       
Query: 121 caacattgaaaacaagaaacaagttgatctgattaatatgcacacacagtagtcagatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 caacattgaaaacaagaaacaagttgatctgattaatatgcacacacagtagtcagatcc 699

                                                                       
Query: 181 tcacagtgatgttacttgttccatgagagcccacggcccacagctcctctagcctcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tcacagtgatgttacttgttccatgagagcccacggcccacagctcctctagcctcagac 639

                                                                       
Query: 241 tgcagagatacatgtcaaaggaaaataacttaacccagttcacttgcctcaacattgaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 638 tgcagagatacatgtcaaaggaaaataacttaacccagttcacttgccacaacattgaaa 579

                                                                       
Query: 301 acaagaaacaagttgatctgattaatatgcacacacagtagtcagatcctcacagtgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 acaagaaacaagttgatctgattaatatgcacacacagtagtcagatcctcacagtgatg 519

                                                                       
Query: 361 ttacttgttccagccctcattagcttgaaggatgctcttgtttgagtctaaatcctgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttacttgttccagccctcattagcttgaaggatgctcttgtttgagtctaaatcctgcca 459

                                                                       
Query: 421 ggactcaaccccaagattggatttcccaggagtgcttggtccttggtgcgctgccaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggactcaaccccaagattggatttcccaggagtgcttggtccttggtgcgctgccaagga 399

                                                                       
Query: 481 gcattaaaggtgagaggactccctttcctacaacatcccccaatcccccaatgctggcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gcattaaaggtgagaggactccctttcctacaacatcccccaatcccccaatgctggcag 339

                                                                       
Query: 541 acagaccctgggagcaaaaagatttaattaccttaaagagtttgatttcttacaaatgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acagaccctgggagcaaaaagatttaattaccttaaagagtttgatttcttacaaatgca 279

                                                                       
Query: 601 gagtacccttccttcccatagtcacattccacatagaagatgggagagagaaatgtgggt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gagtacccttccttcccatagtcacattccacatagaagatgggagagagaaatgtgggt 219

                             
Query: 661 ggtgtgtatgcacactga 678
           ||||||||||||||||||
Sbjct: 218 ggtgtgtatgcacactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no141_p05.g1 MSMg01no141_p05.g1 CHROMAT_FILE:
MSMg01no141_p05.g1 PHD_FILE: MSMg01no141_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:58 2005
         (658 letters)



>mm_chr14_46037382_46038439
          Length = 1058

 Score = 1089 bits (563), Expect = 0.0
 Identities = 631/659 (95%), Gaps = 13/659 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgctgtgacgagagaccacaccttacccaaacaaatgaacaaagaaacccacaaaaaaac 62
           |||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||
Sbjct: 202 tgctgtgacgagagaccacaccttaaacaaacaaatgaacaaagaaacaaacaaaaaaac 261

                                                                       
Query: 63  aacatcaaaacaacaacaacacatggttagatgaagattgttaaccctagctaatagcta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacatcaaaacaacaacaacacatggttagatgaagattgttaaccctagctaatagcta 321

                                                                       
Query: 123 aatgtaggtgggtggcaggttctgttccttgtggcttgttaataatgggtaataatagtt 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 aatgtaggtgggtggcaggttctgttccttgtggcttgttaataatggctaataatagtt 381

                                                                       
Query: 183 atacaggggggttggagagatggctccacagttaagaactcaggctgctcttccaaaggt 242
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 atacaggggggttggagagatggctccgcagttaagaactcaggctgctcttccaaaggt 441

                                                                       
Query: 243 cctgaatttaatcccccaacaacaaatggtgtctcacaaccatctgtatgccctcttctg 302
           |||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 442 cctgaatttaattccccaacaacaaatggtgactcataaccatctgtatgccctcttctg 501

                                                                       
Query: 303 gtgtgcatgaagacagagcattcttgtacataaaataagtcttt---aaaaaaaaaaaaa 359
           |||||||||||||||||||| || ||||||||||||||||||||   ||||||||||   
Sbjct: 502 gtgtgcatgaagacagagcactcatgtacataaaataagtcttttttaaaaaaaaaa--- 558

                                                                       
Query: 360 aagatgtcctctgacatccacacctgtgctttgatatgtgtctatcctgcccacccaaca 419
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 559 --gatgtcctctgacatccacacctatgctttgatatgtgtctatcctgcccacccaaca 616

                                                                       
Query: 420 caataataaataaaaatatt---tttagatagttacacagattagataaatgtaatggtt 476
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 617 caataataaataaaaatattatttttagatagttacacagattagataaatgtaatggtt 676

                                                                       
Query: 477 tccagtacttgggactgaatttaggatctcaggcgtgctcag-caagcaccgtgcttaga 535
           |||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||
Sbjct: 677 tccagtacttgggactgaatttaggatctcaggcgtactc-gacaagcaccgtgcctaga 735

                                                                       
Query: 536 cctgtatccccagcttggtctcctccttttaacttttctgggtgtttaacttttttcaga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cctgtatccccagcttggtctcctccttttaacttttctgggtgtttaacttttttcaga 795

                                                                      
Query: 596 acaaaaactttgggaaagactttcattagtttttttcttccctgtcaaaaacaagttac 654
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ataaaaactttgggaaagactttcattagtttttttcttccctgtcaaaaacaagttac 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)