Query= MSMg01no142_p03.b1 MSMg01no142_p03.b1 CHROMAT_FILE:
MSMg01no142_p03.b1 PHD_FILE: MSMg01no142_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:16 2005
(649 letters)
>mm_chr14_108530303_108531352
Length = 1050
Score = 1183 bits (612), Expect = 0.0
Identities = 639/648 (98%), Gaps = 1/648 (0%)
Strand = Plus / Minus
Query: 3 taatatgaaagtacaacacagtgtcaatttttatttgtatgaattacagttaatcttcat 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 850 taatatgaaagtacaacacagtgtcaatttttatttgtatgaattacagttaatattcat 791
Query: 63 taccaatgcta-ttttttttctttaaaaggacttaatctatttacagcttgtggaaaact 121
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 790 taccaatgctatttttttttctttaaaaggacttaatctatttagggcttgtgtaaaact 731
Query: 122 caccatgtcactgaaacaggtctgaaactcatctctagtcctcaatcctcatacactcag 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 caccatgtcactgaaacatgtctgaaactcatctctagtcctcaatcctcatacactcag 671
Query: 182 gtactgggtgtatagacataattcatcacaccaggtttgtcattgtcaacttgaatggat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtactgggtgtatagacataattcatcacaccaggtttgtcattgtcaacttgaatggat 611
Query: 242 ataaaaagcttggaaaatccatgcccaatttcagagatgactaatatggtaaaagaaatc 301
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 610 ataaaaagcttggaaaatccatgcccaatttcagagatgactaacaaggtaaaagaaatc 551
Query: 302 ataaatgtgaatgggaccttccattggcttggaagggataaaaggggaaagggaaaaggc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ataaatgtgaatgggaccttccattggcttggaagggataaaaggggaaagggaaaaggc 491
Query: 362 agctgttgttctgagattttcttcttccaggttcactattttgtactctgagatgctctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agctgttgttctgagattttcttcttccaggttcactattttgtactctgagatgctctg 431
Query: 422 ttggatcttccctgtcctgttggactgaatactctgaaaccagtgtccttcatgtatctt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttggatcttccctgtcctgttggactgaatactctgaaaccagtgtccttcatgtatctt 371
Query: 482 tccccctttgacatatgtttttttcatgttcttcatagtgaacgaaggttaatgagatat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccccctttgacatatgtttttttcatgttcttcatagtgaacgaaggttaatgagatat 311
Query: 542 taaattggtagcaatgttaatgttgatcaaaatggttgtttacaaggattgccaagatta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taaattggtagcaatgttaatgttgatcaaaatggttgtttacaaggattgccaagatta 251
Query: 602 gtggaaaaagtcataactgatctcattaggattatgaaatatgttccc 649
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 250 gtggaaaaagtcataactgatatcattaggattatgaaatatgttccc 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1050
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1040
Effective search space: 664560
Effective search space used: 664560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_p03.g1 MSMg01no142_p03.g1 CHROMAT_FILE:
MSMg01no142_p03.g1 PHD_FILE: MSMg01no142_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:16 2005
(753 letters)
>mm_chr14_108394679_108395831
Length = 1153
Score = 1365 bits (706), Expect = 0.0
Identities = 742/754 (98%), Gaps = 2/754 (0%)
Strand = Plus / Plus
Query: 1 ttaggccaatggatgaaactagatggatcctgccccatctggggatccatctcatataca 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ttaggccaatggatgaaactagatggatactgccccatctggggatccatctcatataca 260
Query: 61 gtcaacaaacccggacactattctggatgccaagaagtgcttgtggacaggagcctgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaacaaacccggacactattctggatgccaagaagtgcttgtggacaggagcctgata 320
Query: 121 tgctgtctcctgagagtctctgccagagcctgacaaatacagaagtggatgctcga-agc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 321 tgctgtctcctgagagtctctgccagagcctgacaaatacagaagtggatgctc-acagc 379
Query: 180 caaccattggactaagcacatggtcccaaatggaggagctagagaaaggattgagggagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaccattggactaagcacatggtcccaaatggaggagctagagaaaggattgagggagc 439
Query: 240 tgaagggctttgaaaccccataggaagaacaatatcaaccaacaagacccacgagagctc 299
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 440 tgaagggctttgaaaccccataggaagaacaatatcaaccaacaagtcccaccagagctc 499
Query: 300 ccaggaactaaaccaccaaactaagaatacacatggagggacccatggctccagccacat 359
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccaggagctaaaccaccaaacaaagaatacacatggagggacccatggctccagccacat 559
Query: 360 atgtagcagaggatagccttgtagggcataaatgggaggagagactcttggtactgtgaa 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtagcagaggatggccttgtagggcataaatgggaggagagactcttggtactgtgaa 619
Query: 420 ggctagataacccagtgtagggtacattcacaaatatttcaaccttgagttttagtcttt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggctagataacccagtgtagggtacattcacaaatatttcaaccttgagttttagtcttc 679
Query: 480 atttgcagagtctagtctcagtcagaatttgactaattatgtttaactataatatttcta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttgcagagtctagtctcagtcagaatttgactaattatgtttaactataatatttcta 739
Query: 540 tcttcaatacacatttttcaactctctgctaaaaaataaatctactgttaactgaagtga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcttcaatacacatttttcaactctctgctaaaaaataaatctactgttaactgaagtga 799
Query: 600 cattttttttttaacacgtgttcttgtagaccactatccaaacattaccttcatactgcc 659
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctttttttttttaatacgtgttcttgtagaccactatccaaacattaccttcatactgcc 859
Query: 660 tcaggagagggaaagtgtcaacttatttttctttcaagtttgggcaattatagttaatta 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tcaggagagggaaagtgtcaatttatttttctttcaagtttgggcaattatagttaatta 919
Query: 720 aatgataaaaacatattagcatcagtatttaaat 753
||||||||||||||||||||||||||||||||||
Sbjct: 920 aatgataaaaacatattagcatcagtatttaaat 953
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1153
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1143
Effective search space: 849249
Effective search space used: 849249
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
