BAC Information

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BAC

Clone NameMSMg01-145A17
Chromosome14 (Build37)
Map Location 19,038,853 - 19,039,479
singlet/doubletsinglet
Overlap geneNr1d2
Upstream geneThrb, LOC627608
Downstream geneLOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145A17.T7 (MSMg01no145_a17.b1)MSMg01-145A17.TJ (MSMg01no145_a17.g1)
ACCAG348951AG348952
length705813
length of high quality
(start - end)
627 (72 - 698)55 (78 - 132)
definitionCHROMAT_FILE: MSMg01no145_a17.b1 PHD_FILE: MSMg01no145_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:01 2005CHROMAT_FILE: MSMg01no145_a17.g1 PHD_FILE: MSMg01no145_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCAGCACATACGGTTAATGTCTAAGTCCTCCTATATCGGCAAT
GTGCGCTAGATTTATACCATGGGGAGATCAAATGGTATTTTGGCTTTGGC
AGATGAAAAAGTCTAACATTCAGTGTGATTATAATTCAGTGTAACTTCTC
CAGTCTAAGTGCAACACAGCTGATTGGTCTACAGGGGAGGGTGGGCCAAT
GTCTAACAAGACAACGAGTTCTTATCCCAACAGCTACTGGTGACTGACTA
CAGAGACAGCCCAGGACCTGGCGCTAAGTTCTTTTCTATTTCCACAATAT
AGTATACACATATAAATAAACATCTCAGCATAAAATGTACATTAGCATCA
GTTCATGTTCAAAGGCCTCACCCATGAACTTTAAAGGCCAAGAGTTCCTC
AGAGTGCATGTTGTTTAAAGATCGAAGATCTGGCAACTTTAGAAGTAATT
TTGTAAAAATGGAGGCCTCATTTGGATGGTTTTTCATTATTAAGGTCCTT
AGTGCACGGATGAGTGTTTCCTGCAAAGCCTCCACTGAGTTGACATTTTC
AATTCCAGATCGATCTAATGAAAGTAGAGAAGAAAGAAATATGAAGGGAA
GACATTAGCAATAAATGATTACTTACTCACTGACCACTACCAAATTTGAT
ATAGA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGCTAGAGATACAATGA
GAAACTGTCCCAAAGTGGGGTTGGGGGGGGTGTGGGTCTCTTTCTCCCTT
TTTTCTTTTCTCTTCTNATTTTCTCTCCTTTTTATTTTTTTCTCGTGTTC
GTTTCTTTTGCCGTATCTTCCACATTCCCTCTCATTTTAATTTGACTATT
GCGTTTTATATTGTCTTTATTTTGTAGATGTACCCCACTGGCCCACGGTT
TTACCTTGTTCGCTTTGCATTACCATGATCACGAAACACACAAATTTTAT
TTGTTCTCTCAGCACCACACACCTCACATTTGGTTTTTAATATTTAATTC
CCACCCCCACCCTGATTTCAGCATGTTGCCACTCATGTATTTGAGTGTGG
GGGTGGCACCCATCCTGTGGTTACCTTCTTTTANATTATAGATCCAGTGT
TGCCCTGCTCTTTTCTCCGGTTCTATACCTTCAGTTCCTGTGAAATGCGG
TTGCGTGTTTCGATTTTACCTGTATCTCCTCTATCATAGCATTATATTCA
CTACATTCTCATACTCCAATTTAATCCAATAAAACCATCTATCTACATAT
TACAACATTAACTTCTATATTGTCTATTTCTCGCTTCCCGCCATCATCTA
TGTATATAGATACACTAAAATAACCTATCCTTACCAATCGTTCTTTCCTT
CTTCTCCTATCTCTCAGGTTCTTCTCATCCTTCTATTAAACCTCTCCGTT
ATTTCTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_a17.b1 MSMg01no145_a17.b1 CHROMAT_FILE:
MSMg01no145_a17.b1 PHD_FILE: MSMg01no145_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:01 2005
         (627 letters)



>mm_chr14_19038653_19039679
          Length = 1027

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgtctaagtcctcctatatcggcaatgtgcgctagatttataccatggggagatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgtctaagtcctcctatatcggcaatgtgcgctagatttataccatggggagatcaa 260

                                                                       
Query: 61  atggtattttggctttggcagatgaaaaagtctaacattcagtgtgattataattcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggtattttggctttggcagatgaaaaagtctaacattcagtgtgattataattcagtg 320

                                                                       
Query: 121 taacttctccagtctaagtgcaacacagctgattggtctacaggggagggtgggccaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacttctccagtctaagtgcaacacagctgattggtctacaggggagggtgggccaatg 380

                                                                       
Query: 181 tctaacaagacaacgagttcttatcccaacagctactggtgactgactacagagacagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaacaagacaacgagttcttatcccaacagctactggtgactgactacagagacagcc 440

                                                                       
Query: 241 caggacctggcgctaagttcttttctatttccacaatatagtatacacatataaataaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggacctggcgctaagttcttttctatttccacaatatagtatacacatataaataaac 500

                                                                       
Query: 301 atctcagcataaaatgtacattagcatcagttcatgttcaaaggcctcacccatgaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||
Sbjct: 501 atctcagcataaaatgtacattagcatcagttcatgttcaaaggccttaaggatgaactt 560

                                                                       
Query: 361 taaaggccaagagttcctcagagtgcatgttgtttaaagatcgaagatctggcaacttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaggccaagagttcctcagagtgcatgttgtttaaagatcgaagatctggcaacttta 620

                                                                       
Query: 421 gaagtaattttgtaaaaatggaggcctcatttggatggtttttcattattaaggtcctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagtaattttgtaaaaatggaggcctcatttggatggtttttcattattaaggtcctta 680

                                                                       
Query: 481 gtgcacggatgagtgtttcctgcaaagcctccactgagttgacattttcaattccagatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgcacggatgagtgtttcctgcaaagcctccactgagttgacattttcaattccagatc 740

                                                                       
Query: 541 gatctaatgaaagtagagaagaaagaaatatgaagggaagacattagcaataaatgatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatctaatgaaagtagagaagaaagaaatatgaagggaagacattagcaataaatgatta 800

                                      
Query: 601 cttactcactgaccactaccaaatttg 627
           |||||||||||||||||||||||||||
Sbjct: 801 cttactcactgaccactaccaaatttg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)