BAC Information

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BAC

Clone NameMSMg01-146E16
Chromosome14 (Build37)
Map Location 97,273,058 - 97,382,359
singlet/doubletdoublet
Overlap geneLOC668654
Upstream gene4921530L21Rik, Klhl1, LOC100043366
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146E16.T7 (MSMg01no146_e16.b1)MSMg01-146E16.TJ (MSMg01no146_e16.g1)
ACCAG349870AG349871
length1,2511,252
length of high quality
(start - end)		440 (89 - 528)689 (93 - 781)
definitionCHROMAT_FILE: MSMg01no146_e16.b1 PHD_FILE: MSMg01no146_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:53 2005CHROMAT_FILE: MSMg01no146_e16.g1 PHD_FILE: MSMg01no146_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:53 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(97,273,058 - 97,273,497)(97,381,678 - 97,382,359)
sequence
CCCATCTTTTNTTNTAACATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCAATCTGGCAGTTCAGACCATTAAAGATAGATCTACCTG
ATGCCCCAGCTAATCATATCAGTAATTGCCCAAAATCCCCACATATCAAT
ATAGTAAGTTATACTGTATAGTGAGGTTGTAATATTAATAATCATATATG
CATTATTAAAACATGTTGAAACGATAATCTCAAATCTCAAAGTCTTGTAA
ACCTGTAGGAGGAATGATGGCAGCCACCTCTACATAGATGCCAGGAGCTG
TGCAGCCAAGGCATCTCCTGAAAGAGGACCTAATTGAAGACTGCCTGGGA
GACCCAGGATTGCTGATGCAGACAATGCCAGCCAATAGGAAATTAATGCA
TAGAAGAAATGCTTTCTTGGAACCAATGGGGTGATGTGAAGGGTGGAGGG
TATTAAAGAAACTTGCATCACTGTTCAGATGAGCTTTCTGCTTTGATACT
CACCTGAGTCTGTGTTGTGCTACCTCACCTCTAACCCCCAAAGGTAGGTA
GGTTCCACCGTTTAGTATTCTACAGTACAGGTAGCGAAGCCTATGCTAAT
TTTATCGACAATGAATGGAACACTTTCTTCTCATCCTTAATTCAAAGTGC
TCATGTCTATCCGGTGCAATTAAGTTTTATATAAAGTTTTATTAGGTTTT
CGTACTTTCTTCGTTTCTTTATTATATTTGTTAATACTATTATTTTGTTT
CTTTTTTTTTCTAATTTTTATTGCGTTTTATCTTATTATTTAATTTACTA
TTTTCAGTTGTTTTTCTTTCTACTGTATCTTTCTATATCTTGAATATTTT
TGTTTTTTGATTCCTTATCTATATTTTTCTCTTCTGTTTTTCTTTTCTAT
TTCCCATATTTTTTATTTTTTTTTTTTCTCTCCTTTTGTTTTTCCTTTTT
TTTCTTTCTCTTTTTACTTTTTTTTTCTTTTTATATTCTATTTCTTCTTT
TTACTAATTGCCCTTCCCTTTTTTTTTTTTTTTATATTATCTTTTATTTC
TTTTCTTTCTATTCATATTTTATCTTTTTTTGTTTTTTTCATTTCTTTTC
TTTTTATTTTTTTTATTTTTCATATTATTCTTCTACCTATTCTTATATTT
CTTTTATCATCTCTTTTAACTATTTTTTTTCCTACTTATCTTTATTTTCT
TATTCCTTTTAACTTTTTTTTATATATTTTTCTATCTTATCTTTTTTATT
T

NCCTTATCTTTTTTTTTAGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAATCACGAGTTATAA
TATGAAAGCCTTGTAACTGACCCGGTGGTATTTACGTGCCCAGGAATATA
CATATTAAAAATAAGTATATGTATATAAGTAACAAGAAGTAAGGGAAAAG
AGGCCATGAATTTGAGAGTGAATGAGGACATTTGGAAGGGTTCGAGAAAG
GAAAGACTATGGAGTAATTATGTAATTATATTATAATTTCAAAAATAAAT
GCATGATATAAAAACGGTATCAAAATCAAAATTTTATACACTATAATAAA
TAGCACTTTATTTCAGTCCAATATACTATAAAGGAGTTTTCTCTGAGAAA
ACCTGGAGCCACTTCCTATTCTGAGAACCTAATGTCTCTTATGGATAAAC
CCATTAATTTGCTCATAGTTCCTTCATTTTTTTTTAATCTGTAACAACTG
ACCCTGCATCTATTGCAGGATTTTATGTATAGTATTTATATTGCTGTCTA
TTTATGTGCAGGTAGAACTTTTTCAGACAGCCACTGCCTCTGTGTAGACA
CACTGATATTTGCCTTATATTTCACTAACCGGACGGACACTTCTCATGAA
GAGAAGACTGAGCGTCTGACCCTGGCTGTATTGCACAGAAATTAGGCACA
GTAATCTGTAAGTAGACCAGTACTTAGGGGTCTCCATAAAAAATTAGAAA
CATTTCTTGTAAATAAATTTATTTATTCCTTAAAATTACACACAATTAAT
TTTGGACATGTTCATCTATTACTACCTCTTTCGACTACTTGTGCAAGCCC
TTCGCACAATGGGATTTTCAAATTCCTGTCTTCTTTCTGGTTGTTCCTAT
AATCGATCCCAAATTCTATTTGTTGCTGTTTTAAGCTTGGTGATTTTGGC
TCTATCCTCTTTTTTCTGGACTTTTATCTTCCCTAAATATTTGACTGTTT
CTCCCCTCATAATTCTTTTATTGTCGTTGTTTTTTCTGCTTATTGGTGTT
CATTTTCCTGGTTTTCTATTCTTTTATTTTCCTTTATTCTTATATGTTTC
ATTTTTTTGTTTTTTTCTTTCCTGCTTTCTTTCATTTATATATTTAATCT
TCTTATACTTATTTCGTTTCTTATTTCTCTCTACTTTCCCTTTATTTTAT
TGTTTTTAAATTTTCATTTATTTCTCTCTTATAAATGCTTCTTTTTATTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_e16.b1 MSMg01no146_e16.b1 CHROMAT_FILE:
MSMg01no146_e16.b1 PHD_FILE: MSMg01no146_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:53 2005
         (440 letters)



>mm_chr14_97272858_97273697
          Length = 840

 Score =  804 bits (416), Expect = 0.0
 Identities = 434/440 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatctacctgatgccccagctaatcatatcagtaattgcccaaaatccccacatatca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||
Sbjct: 201 tagatctacctgatgccccagctaatcatatgagtaattgcccaaaattatcacatatca 260

                                                                       
Query: 61  atatagtaagttatactgtatagtgaggttgtaatattaataatcatatatgcattatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatagtaagttatactgtatagtgaggttgtaatattaataatcatatatgcattatta 320

                                                                       
Query: 121 aaacatgttgaaacgataatctcaaatctcaaagtcttgtaaacctgtaggaggaatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacatgttgaaacgataatctcaaatctcaaagtcttgtaaacctgtaggaggaatgat 380

                                                                       
Query: 181 ggcagccacctctacatagatgccaggagctgtgcagccaaggcatctcctgaaagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcagccacctctacatagatgccaggagctgtgcagccaaggcatctcctgaaagagga 440

                                                                       
Query: 241 cctaattgaagactgcctgggagacccaggattgctgatgcagacaatgccagccaatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaattgaagactgcctgggagacccaggattgctgatgcagacaatgccagccaatag 500

                                                                       
Query: 301 gaaattaatgcatagaagaaatgctttcttggaaccaatggggtgatgtgaagggtggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaattaatgcatagaagaaatgctttcttggaaccaatggggtgatgtgaagggtggag 560

                                                                       
Query: 361 ggtattaaagaaacttgcatcactgttcagatgagctttctgctttgatactcacctgag 420
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtattaaagaaacttgcagcagtgttcagatgagctttctgctttgatactcacctgag 620

                               
Query: 421 tctgtgttgtgctacctcac 440
           ||||||||||||||||||||
Sbjct: 621 tctgtgttgtgctacctcac 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no146_e16.g1 MSMg01no146_e16.g1 CHROMAT_FILE:
MSMg01no146_e16.g1 PHD_FILE: MSMg01no146_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:53 2005
         (689 letters)



>mm_chr14_97381271_97382359
          Length = 1089

 Score = 1280 bits (662), Expect = 0.0
 Identities = 677/682 (99%)
 Strand = Plus / Minus

                                                                        
Query: 8    atatgaaagccttgtaactgacccggtggtatttacgtgcccaggaatatacatattaaa 67
            ||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||
Sbjct: 1089 atatgaaagccttgtaactgagccggtggtatttacgtgtttaggaatatacatattaaa 1030

                                                                        
Query: 68   aataagtatatgtatataagtaacaagaagtaagggaaaagaggccatgaatttgagagt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 aataagtatatgtatataagtaacaagaagtaagggaaaagaggccatgaatttgagagt 970

                                                                        
Query: 128  gaatgaggacatttggaagggttcgagaaaggaaagactatggagtaattatgtaattat 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  gaatgaggacatttggaagggttcgagaaaggaaagactatggagtaattatgtaattat 910

                                                                        
Query: 188  attataatttcaaaaataaatgcatgatataaaaacggtatcaaaatcaaaattttatac 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  attataatttcaaaaataaatgcatgatataaaaacggtatcaaaatcaaaattttatac 850

                                                                        
Query: 248  actataataaatagcactttatttcagtccaatatactataaaggagttttctctgagaa 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  actataataaatagcactttatttcagtccaatatactataaaggagttttctctgagaa 790

                                                                        
Query: 308  aacctggagccacttcctattctgagaacctaatgtctcttatggataaacccattaatt 367
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  aacctggagccacgtcctattctgagaacctaatgtctcttatggataaacccattaatt 730

                                                                        
Query: 368  tgctcatagttccttcatttttttttaatctgtaacaactgaccctgcatctattgcagg 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  tgctcatagttccttcatttttttttaatctgtaacaactgaccctgcatctattgcagg 670

                                                                        
Query: 428  attttatgtatagtatttatattgctgtctatttatgtgcaggtagaactttttcagaca 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  attttatgtatagtatttatattgctgtctatttatgtgcaggtagaactttttcagaca 610

                                                                        
Query: 488  gccactgcctctgtgtagacacactgatatttgccttatatttcactaaccggacggaca 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  gccactgcctctgtgtagacacactgatatttgccttatatttcactaaccggacggaca 550

                                                                        
Query: 548  cttctcatgaagagaagactgagcgtctgaccctggctgtattgcacagaaattaggcac 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  cttctcatgaagagaagactgagcgtctgaccctggctgtattgcacagaaattaggcac 490

                                                                        
Query: 608  agtaatctgtaagtagaccagtacttaggggtctccataaaaaattagaaacatttcttg 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  agtaatctgtaagtagaccagtacttaggggtctccataaaaaattagaaacatttcttg 430

                                  
Query: 668  taaataaatttatttattcctt 689
            ||||||||||||||||||||||
Sbjct: 429  taaataaatttatttattcctt 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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