BAC Information

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BAC

Clone NameMSMg01-146H09
Chromosome14 (Build37)
Map Location 36,126,052 - 36,126,644
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneGlud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146H09.T7 (MSMg01no146_h09.b1)MSMg01-146H09.TJ (MSMg01no146_h09.g1)
ACCAG349995AG349996
length1,2371,272
length of high quality
(start - end)
593 (139 - 731)566 (88 - 653)
definitionCHROMAT_FILE: MSMg01no146_h09.b1 PHD_FILE: MSMg01no146_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:15 2005CHROMAT_FILE: MSMg01no146_h09.g1 PHD_FILE: MSMg01no146_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCACTCTTTNNNGCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGAGATTTCCCAGCCTTTATACCTCAGAGCAGAGTCA
CCATTGTATCCATCACTCCAACTGACTCTCTCACCCCCTTCAACTTGTAA
TTGAACTAACAGAAACGTTATCACATTGACACCCCATCTATTCAAATGTG
TTTCAAGAGTGTGGCAGAAAATGGCATGGACTGTGGTGTCTGGTCACTGT
GCTGGCTTATCCAAGCTGTAGGACCCAATATAGTATTGCCATGAAATGTT
CCCAAGATTGGAACTTTGGCATCTTTATGCACTTAAGAGTTGCTGAATGG
CTCAACAAAATCACCTCTCTCTGGCATTCAGTTTGCTGAAGAAAACCACT
GACCTTCTATTCTCCATGTCCTAGAAACCTTCAGTTCTTTTCCCTGGTAA
TGGTTTGTCAATCTGGTAAGAGAAGCTTTTCCTCTGGAGCATCCTTCAGG
CTTCCCTAACCTATCTCAGATTTCATGTCCCTTCCAGAGCTATATGTAAT
GGTAAAGACTCCAATTGCCAAGTCAGCAAGGATGGTGTGGAATGCTGCAC
GAGTCAGGTGCATGGGTGGTCTCCTTGGGTACAGATGCCTGCTACTTGAG
TTGCAGGTGTTCACATGTGTCTTTGTAGCTGAGAAAGGCTTATATGGAGT
CAGATGCTCTTTCATATTCTCCCTTCGGATTCAGAGGTGAACAGGTCCTC
CTTACAACCCTTTATCCTCAGCTGCCAGTTGCTCCATCCTCTGGCCTGTC
CACAGTGCCCTCTCAAGACAGGTGGTCTAGTATCAGTTTGTCACAAAATT
CTTGCCTGTGGATTGATTGTTCATGCTGAGGCATCTGGATGTCATCTTGG
TCTCCCAGCTGGACCCTCTGTTAATGGTTATTTGAAATTGTTGGCCTAAC
AAATCCTGTTTGTAAAATTGGTCATAATTTAGCTGTTTGCTGTTTTATCT
CCATTATTTTCTTCCAAAATGTCCCCTTTTGTTTTGAATTATTATATATT
TCAATAATCTTCCTGGCCTCTTTTAACCTTTCTGATTTAAAGGTTCCCCC
TTCTTTATTTAAAAATCTTCTTTTTTATTTCACTCCTTACTATTTCTAAA
AAAAACGTTTCTCTTCTACAAAATCATATTAATCCTCATTTTTGATACTA
ATTATTCTAATTCTATAATCACTCTCCTTATCGTCTT
CTTCTTTTNTTTTTACGAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAAGATTTCATTTTTCTAACA
GTTGAGTTATATCCCCCTGTGTAAATGCACCACCCCTTTTTAATTCATTT
TTCTGTTAAGGGACATCCTACATGTGGTATAGGATTGGAGTTGGGAACAA
GAGTATGAATTCATTGTTGCTTTAATAACAGCATAAATGAGTGTATTTAG
AAATTATAGGTATATTTTGTGAGTCATTATTAGACCCACAGACACTCCCT
AGCTCTAATTTCTAAGAAAGATCAATACTAGTACTTATACCTGAGTAACA
GCAAGCACAGCCAGTACCTGTGTCTTCTCATCTAGTACCATGTGTAAAGA
TATATTTTAGCTCCTTGGTGAAATCACTGATATTAAGCTGGGGGCAAAGA
ACAAAGATCTCACAGTGCCAGAAAGCAAGGAAATGCAGGAAGAATAAAGA
GAATAAAAAAACATTGGAGCCAAGCAAAGGAGCTCTCAATAGCCAAAGCC
AAAAGACTGTGAATGAAGAAACCAAAGTGCAGCTTCTTACTTTGAAGAAT
AAAATATTCGTCAGTCTATATGAATGTAAATTAACAAAAAATGATAATGA
TCCTTAAAGAAGAATTCTAGATAAATCACATAGACCTTACTACCTCTGTG
AAGTGTAAGCTCTCAGCTCTCTAGGAAAACAGAACATAATGACTCATTAT
AAAAAATTAGGGTATAACAAATAGGACAAAGTAATTACATGTTGGAACAA
TCTGGTAAACACTGCCCTTATTCAAAAGAACATAGTTTACAGCATCCAAT
GGTTAATTAAGTCCTATTCCATAAACGTATGAATCTCTAATCTGATGGTT
TTGAAAATGGACCCTTTTTTTGTTTACCTTTTCTTCCTAATACTCATCCT
CCATTCTAAACTTGGAATATTGGTTACAAACTTTCCTAATGGAATCAATT
GTTCCATACTAATCATAATAATATACCAACTCCCTGGATTTTTAGGGTCT
TTGAAATACCATAGGAATTTTTAAAATGCTTATTTTTTACCTTTTTTTCC
CCATGTATAACTCAGTNATAATTGGGTTTTTATTGGTATCCAAAAATCTA
TTTTTTTGGTTTTACTCCTGATAACAATCCTTAATTAACTCTTATATCCG
TTTGTTATATCTTATTGTAAANTATACCTTGTCTTCTTTGTTTCCATATG
TTCTTCTTATTTCTTCTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_h09.b1 MSMg01no146_h09.b1 CHROMAT_FILE:
MSMg01no146_h09.b1 PHD_FILE: MSMg01no146_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:15 2005
         (593 letters)



>mm_chr14_36125852_36126844
          Length = 993

 Score = 1085 bits (561), Expect = 0.0
 Identities = 585/593 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaacttgtaattgaactaacagaaacgttatcacattgacaccccatctattcaaatg 60
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 201 ttcaacttgtaattgaactaacagaaacgttatcacatcgccaccccatctattcaaatg 260

                                                                       
Query: 61  tgtttcaagagtgtggcagaaaatggcatggactgtggtgtctggtcactgtgctggctt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttcaagagcgtggcagaaaatggcatggactgtggtgtctggtcactgtgctggctt 320

                                                                       
Query: 121 atccaagctgtaggacccaatatagtattgccatgaaatgttcccaagattggaactttg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atccaagctgtaggacccaatatagtattgtcatgaaatgttcccaagattggaactttg 380

                                                                       
Query: 181 gcatctttatgcacttaagagttgctgaatggctcaacaaaatcacctctctctggcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatctttatgcacttaagagttgctgaatggctcaacaaaatcacctctctctggcatt 440

                                                                       
Query: 241 cagtttgctgaagaaaaccactgaccttctattctccatgtcctagaaaccttcagttct 300
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 441 cagtttgctgaagaaaaccactgaccttctagtctccatttcctagaaaccttcagttct 500

                                                                       
Query: 301 tttccctggtaatggtttgtcaatctggtaagagaagcttttcctctggagcatccttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttccctggtaatggtttgtcaatctggtaagagaagcttttcctctggagcatccttca 560

                                                                       
Query: 361 ggcttccctaacctatctcagatttcatgtcccttccagagctatatgtaatggtaaaga 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ggcttccctaacctatctcagatttcatgtcccatccagagctatatgtaatggtaaaga 620

                                                                       
Query: 421 ctccaattgccaagtcagcaaggatggtgtggaatgctgcacgagtcaggtgcatgggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccaattgccaagtcagcaaggatggtgtggaatgctgcacgagtcaggtgcatgggtg 680

                                                                       
Query: 481 gtctccttgggtacagatgcctgctacttgagttgcaggtgttcacatgtgtctttgtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctccttgggtacagatgcctgctacttgagttgcaggtgttcacatgtgtctttgtag 740

                                                                
Query: 541 ctgagaaaggcttatatggagtcagatgctctttcatattctcccttcggatt 593
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 ctgagaaaggcttatatggagacagatgctctttcatattctcccttcggatt 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)