BAC Information

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BAC

Clone NameMSMg01-146K03
Chromosome14 (Build37)
Map Location 109,933,035 - 109,933,799
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146K03.T7 (MSMg01no146_k03.b1)MSMg01-146K03.TJ (MSMg01no146_k03.g1)
ACCAG350117AG350118
length1,2021,306
length of high quality
(start - end)		769 (123 - 891)184 (126 - 309)
definitionCHROMAT_FILE: MSMg01no146_k03.b1 PHD_FILE: MSMg01no146_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:38 2005CHROMAT_FILE: MSMg01no146_k03.g1 PHD_FILE: MSMg01no146_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTCCTTTTTTAATCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCATTTATAATTAATCTCATTAAGAGATTCTAGATTGATAAT
TGCATTTCATTCATGCCTTAAGTTTCATTCATATCACCCTTTGCTTAATA
AGCATAAAACAAAAGAATAATATGCATTATATGGCATCACTAATATTAGA
GTAAAATGATAAATTTATCACTAAAACTGATCTATCTGAGGGCAAATCTG
CTTTAATTCTTTCCATTTAAAATTATGTTTTCAGTTTTAAAAGGAAACTT
TTCTGAAAACCACGTGGATATCCTCATACATTAATTTCACATATCCTTTT
TGCATTAAGATACATAATCTTGGAAAGAATTTGTGGCAACTCTCCATAGA
CTTTTTATTACTCACATATTTTGACTTGAACATTATCCATGTAGTCAGTG
AAAGTGGACCTTAAGTAATTAAAGCAAACAGTTCATTTATTCATATTAGT
ATTTATTTTAGCAATAAATCATCTTTGCCATTTACTGGAACCTGTGCAAG
TCTAGTGCTTCAAATATTATCCTAGCTTTTATGTTTCACCTCACCATTTT
CCAGAAACAGTCGAGAGTAAATACAAAGATGAATTCAACTCCATAAGAGT
ACCTCATACATTAACTGACATAATTATTTTTCTGAACCCTGTCTTTGAGC
ATATATGTATATGAACAATCATGTGTATCATTTCTTTAAAGCTACTTATG
TTCACCTCTTTATTTTTTTGTTATTTTTACTTTGGAGCTAGGTATTAATT
TTCTTTTTTCATTTGGAAAATAAATTCAAAATATGACTTGTTTAGCATAT
AAAACAAGCTTTTAATAGTAGAAGTTTATGTTTTGTCNAGAGATTAATTT
AACATCCATTCTACAATTTATTCCCCTTGTCAAAATGAATTAATTTTAAA
ACAACTTCTCTAAATCTTCTCCTGATTAATGGAATGATTGCAGGGGTTAA
AATTAAAATTATTAACTTAAATATTAAAAAAAAAAGACCCACCGGAACTT
TTTTAAACCTTTTTTTGGGTCCCAATGAAATTTTCCTGGAAAAAAAAGAA
AATTTCCTCTTGTCCAAAATGTTTGGCCAACAAAAACAAAACTTGGGGGG
TGGAATTCCATAGGTTTCTAACTTAAAATTATCCCGGGGGAGGTCTTTTT
AA

CCTCCCTTTTTNATAAGCAGGGAGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAATATGTTTTCAATATT
TGCTCTCTCCACTATGTCTCTTCTTTATATGTATAAACCCCAAATCTCTC
TCTCTCTCTCTCTATATATATATATATATATATATATATATATACAATAT
ATACATATATATATATATGATTTTTCTCTTTGTCTCTGTCTCTCTCACTA
TGTATATAGGTAGGTAGGTAGGTAGATAGATAGATAGATAGATAGAGATA
TATAGTGNGNGNGNGNGNGNNNNNNNNNNNNNNTTTTTTTTAGTNTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTNTTTTTT
TNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNN
NNNNNCCNNNTNNNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTNTTTTNTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTNTTTNTTTTTNTTTTTTTTNTTNTTTTTTTTTTTTTTNTTTTTT
NTTNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_k03.b1 MSMg01no146_k03.b1 CHROMAT_FILE:
MSMg01no146_k03.b1 PHD_FILE: MSMg01no146_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:38 2005
         (769 letters)



>mm_chr14_109932835_109934003
          Length = 1169

 Score = 1332 bits (689), Expect = 0.0
 Identities = 746/765 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcattcatatcaccctttgcttaataagcataaaacaaaagaataatatgcattatat 60
           |||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 tttcgttcatattatcctttgcttaataagcataaaacaaaagaataatatgcattatat 906

                                                                       
Query: 61  ggcatcactaatattagagtaaaatgataaatttatcactaaaactgatctatctgaggg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 905 ggcatcactaatattagagtaaaatgataaatttatcactaaaaatgatctatctgagga 846

                                                                       
Query: 121 caaatctgctttaattctttccatttaaaattatgttttcagttttaaaaggaaactttt 180
           ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| 
Sbjct: 845 caaatcttctttaattctttccatttaaaatcatgttttcacttttaaaaggaaacttta 786

                                                                       
Query: 181 ctgaaaaccacgtggatatcctcatacattaatttcacatatcctttttgcattaagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ctgaaaaccacgtggatatcctcatacattaatttcacatatcctttttgcattaagata 726

                                                                       
Query: 241 cataatcttggaaagaatttgtggcaactctccatagactttttattactcacatatttt 300
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 725 cataatcttggaaagaatttgtggcaacgctccataggctttttattactcacatatttt 666

                                                                       
Query: 301 gacttgaacattatccatgtagtcagtgaaagtggaccttaagtaattaaagcaaacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gacttgaacattatccatgtagtcagtgaaagtggaccttaagtaattaaagcaaacagt 606

                                                                       
Query: 361 tcatttattcatattagtatttattttagcaataaatcatctttgccatttactggaacc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 605 tcatttattcatattagtatttattttagcaataagtcatctttgccatttactggaacc 546

                                                                       
Query: 421 tgtgcaagtctagtgcttcaaatattatcctagcttttatgtttcacctcaccattttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgtgcaagtctagtgcttcaaatattatcctagcttttatgtttcacctcaccattttcc 486

                                                                       
Query: 481 agaaacagtcgagagtaaatacaaagatgaattcaactccataagagtacctcatacatt 540
           ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 485 agaaacagtggaaagtaaatacaaagatgaatttaactccataagagtacctcatacatt 426

                                                                       
Query: 541 aactgacataattatttttctgaaccctgtctttgagcatatatgtatatgaacaatcat 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 aactgacataattatttttctgaaccctgtctttgagcatatatgtgtatgaacaatcat 366

                                                                       
Query: 601 gtgtatcatttctttaaagctacttatgttcacctctttatttttttgttatttttactt 660
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgtatcatttttttaaagctacttttgttcacctctttatttttttgttatttttactt 306

                                                                       
Query: 661 tggagctaggtattaattttcttttttcatttggaaaataaattcaaaatatgacttgtt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggagctaggtattaattttcttttttcatttggaaaataaattcaaaatatgacttgtt 246

                                                        
Query: 721 tagcatataaaacaagcttttaatagtagaagtttatgttttgtc 765
           ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagtatataaaacaagcttttaatagtagaagtttatgttttgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1169
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1159
Effective search space:   879681
Effective search space used:   879681
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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