BAC Information

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BAC

Clone NameMSMg01-147E14
Chromosome14 (Build37)
Map Location 31,683,730 - 31,684,091
singlet/doubletsinglet
Overlap geneTmem110
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1
Downstream geneMustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147E14.T7 (MSMg01no147_e14.b1)MSMg01-147E14.TJ (MSMg01no147_e14.g1)
ACCAG350599AG350600
length710743
length of high quality
(start - end)
367 (45 - 411)210 (68 - 277)
definitionCHROMAT_FILE: MSMg01no147_e14.b1 PHD_FILE: MSMg01no147_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:50 2005CHROMAT_FILE: MSMg01no147_e14.g1 PHD_FILE: MSMg01no147_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGCTTTATTCCGAGGGCTGCCTCTTTTAGAAATGAGGTGATTTGT
AGAGCTTTAGAGACTCATAAAGTACCTTAGAGCCAGGGTTCTGGGATCCA
GCTAGGGGCATGAGGGCTCGTAATGAGCTGCAAAGGGCTTGGGTGGTGGT
GTTGTCCTACTCAGATCCTGGTGTGTGTGGCTAAGCACCTGCCTGTCCCT
GCAGGAGACCCTCTGCAGTGCGGGGCCTGGGTAGGACAGTGCGCCCTCTA
CATCGTGATCATGATCTTTGAAAAGTCCGTGGTCTTCATCGTCCTCCTCA
TACTCCAGTGGAAAAAGGTTTGCCTCCATCCCTGCTCCTGCGCTCTGTGC
TAAGCCGAGCCCCACCACAGCCCCATCATCCCCAGCCCTGGCATCCGCCC
GGCCTGCTGGTTTCTATTTTAGCTCCATGCGTGAGTCCTGGGTCTGGTCC
GACGCACCAGCTGATTATAAGAGCGTTAGTTTGTCATTCTTGCCCTTGGT
GTTCCCGCTCTTGGTGTACACTCCTTCTCCCCTAGATGATATCTGTTCAC
GCGCATACCTAAAGCAGATCCCCGCCCCCCTCTGCTGCGTCTGTTCGCCT
GCTCCTTTTGTTCATTTGCTTACCTGTGAATGCGCCTTAATCTCTACCGC
CCCTCCCACN
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTATGTAAACCAGGCTGGCCTCAGACTTGGAA
ATCCACCTGCCTCTGCCTCACTGGGGTTAAAGGCATGTGCCACCACTGCC
CGGCTCAAAGAAATGTTGAAATGAAGGTCTGGGCATGCAGCTCTGTGATA
GAGCCCCTGTCTAGCATGCAAAGGGTTGTGGGTTAAAACCCTAGCATAGG
GACTTGGTGGGGGGGGGGTGAAGTTTCCCCTCCCCTCTCTCCTCCCCCCT
CCTTTCTTTTTTTTTCTTCTCCCTTTTTTTCTTCTCCTTTCCCCCTTTTT
TCTTCCTTTTTTCTTTTTTTCTTATCCTCCCCCCCCTCTTTTATTCTCTT
TTTTTCCCCCCCCCCTTTGCNCTTATCCCTATATATCACGCATTTCCTAT
ATCCAACACCCCACCCCACCTTACTCAATCCCCTTTCCCCTCTCACCCCC
CTCACTTTTCCCTCCTTCTTTACTTCCCCCTTTTTTCCCCCCCTATCCAC
CACCTTTCTTCTATTATACTCCACCTACTTATTCCCCAACCTTTCCACCT
TCTCTCTATCCCCCTTTTTGCTCTCACTTTAATCCTCCTCTTCACAACTT
ATATCTTCTCCCTCCCCTCCAATTTTCCCCTTCCCCCCCTACCCATCCCT
ATTTATTATTTACCTCCCACCCCACCCAATTTCTATTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_e14.b1 MSMg01no147_e14.b1 CHROMAT_FILE:
MSMg01no147_e14.b1 PHD_FILE: MSMg01no147_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:50 2005
         (367 letters)



>mm_chr14_31683527_31684293
          Length = 767

 Score =  685 bits (354), Expect = 0.0
 Identities = 360/362 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggctttattccgagggctgcctcttttagaaatgaggtgatttgtagagctt 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggctttattcagagggctgcctcttttagaaatgaggtgatttgtagagctt 263

                                                                       
Query: 64  tagagactcataaagtaccttagagccagggttctgggatccagctaggggcatgagggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagagactcataaagtaccttagagccagggttctgggatccagctaggggcatgagggc 323

                                                                       
Query: 124 tcgtaatgagctgcaaagggcttgggtggtggtgttgtcctactcagatcctggtgtgtg 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 tcgtaatgagctgcaaagggcttgggtggtggtgttgtactactcagatcctggtgtgtg 383

                                                                       
Query: 184 tggctaagcacctgcctgtccctgcaggagaccctctgcagtgcggggcctgggtaggac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggctaagcacctgcctgtccctgcaggagaccctctgcagtgcggggcctgggtaggac 443

                                                                       
Query: 244 agtgcgccctctacatcgtgatcatgatctttgaaaagtccgtggtcttcatcgtcctcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgcgccctctacatcgtgatcatgatctttgaaaagtccgtggtcttcatcgtcctcc 503

                                                                       
Query: 304 tcatactccagtggaaaaaggtttgcctccatccctgctcctgcgctctgtgctaagccg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcatactccagtggaaaaaggtttgcctccatccctgctcctgcgctctgtgctaagccg 563

             
Query: 364 ag 365
           ||
Sbjct: 564 ag 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)