BAC Information

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BAC

Clone NameMSMg01-148C18
Chromosome14 (Build37)
Map Location 110,412,599 - 110,413,247
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148C18.T7 (MSMg01no148_c18.b1)MSMg01-148C18.TJ (MSMg01no148_c18.g1)
ACCAG351252AG351253
length697738
length of high quality
(start - end)		652 (46 - 697)81 (92 - 172)
definitionCHROMAT_FILE: MSMg01no148_c18.b1 PHD_FILE: MSMg01no148_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:59 2005CHROMAT_FILE: MSMg01no148_c18.g1 PHD_FILE: MSMg01no148_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGGTAACGAATGTGTAATTTTCCAGTACTGAGGTTAAGAGAG
TAAGATGAATCAAGACTGATGCATCATAGGCCATGTCTGTTGGCAGGACA
TGATTCTAGGTTCTGGTGACTGTGTGTGGCACAGGAGGACACATTTCTCT
TGTTCTGGGAATTCAGGGAGGTGAATGAAGAGCAGAAGAGAGTGCATAAA
AACCTGTTCCCATTTGCAAATGTAATTCCCAGAACAATTGCATCTACTGC
AAAAACAAATATCATATAGAAAACAAAAGACAATAGAAGAGTCTGGAAAA
TGTATGCTTAACTACAGAGTGAATCACATTTTTATTATAAAACCCACATT
CTGCATTCATTGACATTGAAAATTCAGTCCGCATGATATTTCTCATGCGT
GAAGAAACCAGTATAATGGTAAGCATCCAAAATGACAGCAGTAAGTGATC
ACTTGAGACAACCTTTACACTGACCTCATAGTTTGGGATTTAAGCAAACA
CCACTGTTTAAATATTATGAAACTAAATTCTGCAGTGAAACAGTAGCTTC
TACTGCAAAGTCATTGCAAGGCATGTGTTCTAAAAGACTGTTTCTTCCTG
TTAGGAAAAAATTAAATCAAAAGTTAAAACTTGTAAATAGCAATATT

CCCTNCTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACCCGGCAGTAAAA
ATAATGAGATCAGGTAGCCAACAATTCATACCCATATATATATATATATA
TATATATATATATATATATATGTGTGCGTGTGNCNCCCCGCCCCCTCTCC
CCCCCCCCCGCCCCCCCGCCCCCCCCGCCCCCCCCCCGACCCCCCCCCCC
ACCCCGCCCCGCCGCGCGCCCGCCCGCCGCCCCCCCCCCCCCTCTCCGCC
CCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCTTCTTCCCCCCCCCCCCC
CCCCCCCCCCTCTCCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCCCCTC
CCCTCTCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCTCCTGCCCCC
CCTCCCCCCCCTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTCCCCTCCCCCCCTTCCCCCTTCCCTCCCCCCCCCCCCCCCCCTCCCCC
CCCCCTTCCCCCCCCCCCCCCCCCCCTCCTCTCCCCCCCCCCTCCCCTCT
CCTCTTCCCCCCCTCCCCCCCCCTCTTCCTCTCCCCCCCCCTTCCCCCCC
CCCCCCCCCTCCCCCCCCCCCCCCCCCTTCCTTCCTCTATCCCCCCCCCC
CCCCCCCCCTCCCCCCCCCCCCCTCCTCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_c18.b1 MSMg01no148_c18.b1 CHROMAT_FILE:
MSMg01no148_c18.b1 PHD_FILE: MSMg01no148_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:59 2005
         (652 letters)



>mm_chr14_110412395_110413447
          Length = 1053

 Score = 1193 bits (617), Expect = 0.0
 Identities = 641/649 (98%), Gaps = 1/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaggtaacgaatgtgtaattttccagtactgaggttaagagagtaagatgaa 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaggcaaggaatgtgtaattttccagtactgaggttaagagagtaagatgaa 264

                                                                       
Query: 65  tcaagactgatgcatcataggccatgtctgttggcaggacatgattctaggttctggtga 124
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 265 tcaagactgatgcatcataggctatgtctgttggcaggacatgactctaggttctggtga 324

                                                                       
Query: 125 ctgtgtgtggcacaggaggacacatttctcttgttctgggaattcagggaggtgaatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtgtgtggcacaggaggacacatttctcttgttctgggaattcagggaggtgaatgaa 384

                                                                       
Query: 185 gagcagaagagagtgcataaaaacctgttcccatttgcaaatgtaattcccagaacaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcagaagagagtgcataaaaacctgttcccatttgcaaatgtaattcccagaacaatt 444

                                                                       
Query: 245 gcatctactgcaaaaacaaatatcatatagaaaacaaaagacaatagaagagtctggaaa 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcgtctactgcaaaaacaaatatcatatagaaaacaaaagacaatagaagagtctggaaa 504

                                                                       
Query: 305 atgtatgcttaactacagagtgaatcacatttttattataaaacccacattctgcattca 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 505 atgtatgcttaactacagagtgaatcacatttctattataaaacccacattctgcattcg 564

                                                                       
Query: 365 ttgacattgaaaattcagtccgcatgatatttctcatgcgtgaagaaaccagtataatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgacattgaaaattcagtccgcatgatatttctcatgcgtgaagaaaccagtataatgg 624

                                                                       
Query: 425 taagcatccaaaatgacagcagtaagtgatcacttgagacaacctttacactgacctcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taagcatccaaaatgacagcagtaagtgatcacttgagacaacctttacactgacctcat 684

                                                                       
Query: 485 agtttgggatttaagcaaacaccactgtttaaatattatgaaactaaattctgcagtgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtttgggatttaagcaaacaccactgtttaaatattatgaaactaaattctgcagtgaa 744

                                                                       
Query: 545 acagtagcttctactgcaaagtcattgcaaggcatgtgttctaaaagactgtttcttcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagtagcttctactgcaaagtcattgcaaggcatgtgttctaaaagactgtttcttcct 804

                                                            
Query: 605 gttaggaaaaaa-ttaaatcaaaagttaaaacttgtaaatagcaatatt 652
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 805 gttaggaaaaaaattaaatcaaaagttaaaacttgtaaatagcaatatt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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