BAC Information

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BAC

Clone NameMSMg01-149B14
Chromosome14 (Build37)
Map Location 51,575,190 - 51,575,768
singlet/doubletsinglet
Overlap geneLOC667034
Upstream geneOlfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp
Downstream geneLOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149B14.T7 (MSMg01no149_b14.b1)MSMg01-149B14.TJ (MSMg01no149_b14.g1)
ACCAG351914AG351915
length704706
length of high quality
(start - end)
425 (46 - 470)558 (77 - 634)
definitionCHROMAT_FILE: MSMg01no149_b14.b1 PHD_FILE: MSMg01no149_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:14 2005CHROMAT_FILE: MSMg01no149_b14.g1 PHD_FILE: MSMg01no149_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTTTTCGCGAATTCTGCGGTCCCCTATGAGCCCTGGTTCTAGA
CAATGGACATCCACGCTGGACTCTGGCAAGATGCGAAAAGCTAACTGTGG
AAACAGCGTTGAGCCCCACCACACCTCAGCCCCGCAGTCAGACCTGAGAA
GTCGAGACGTCATCTCCCAGGAGCCCCACAACTGTCCTTAGTAGGAAGAG
ACTTCCAAAGCCAAACCTGGAGGGACAGAAGTAGAAACCCACCTGGACCC
GGAACTGGAGGCGGCAGCTTTGTTTCTCACTCCTTCCTTCCTGTTGGGAT
GGCGAATAGAAGAATGAAATTTCCTTTGGAATCTCGTCCCCGATATGGGT
GAGGTCGGCGTTGCCTGGCCACGCAAACAGATTGGGGCGGGGTGCAGAGG
AGTGGAGGGTGGGCGTTCCAGCCTCGGCGGCTGGGACCGCATCCCATTCT
TCCAAGGATGCCCCTCCCCATTGGGTCTGCCTGCAAAATCCAAAACAGCA
ACTCTAACTTCCAAGCAGACTAGGCGGGTTTCTGTACCGAAATCGGACTG
CTTGATTTCTCGAGGACGTCTCTTGACTGTCCTGAAGATTTTGCAAGGTT
TTCCCCTGCCAGGTTCTCCTCCGCCTATGCCCTTGACTTCCTTACCTGTT
GCCA
TTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGACAGCCAGCCAGAGCTATAC
AGAGAAACTCTGTCTTGAAAAAAAAAAAAAAGTTCTCAAAGTTAGCAGAA
TTTTTGGACTCCGTACTGTGTGTCCAATCAACTTGCCATCCTGTTTATGC
CTACTATCTAGAACTCATTTCCATCTGGGTCTCGAAGTGTTTCCCCAAAA
TCCTGCAGGCTCCTAGTCAGCACTGTTACCCACCCAGCAACCACTTCCCT
AATCCCGAAAGCAGCTCAGATACTGTTTCGTTTCATTTTATTTCAAGATT
GCGCAATCTATGAAAAAATTGAATTTTTTCGCTTTTCAAATTCTTATCCA
ATAACGCAGCGGAGAATGGAGTTGCAGATAGGCAGTTCCGGGGCTCTCTA
CCCTGCTTCTCTTTCCACACAGGCCTCCTTTTCTAGCTGGGAAATCATGA
CTGTGTGCGGGGGATCACCTGCTGGTGGCCTTAGACTAGGAGTGGATCTC
TTTGAAATGAACTCTAGAGAGGTTTCCTGCCACACCTCTGGATGAGGGTG
TGTCACCTTGGAGACAAGGCTGCTGCCATTGGTTGGAGTCTGGGGCTAGG
GATGTAAAGGCCGGCCTATGTAATAGTGCACTAACAGTCTTGACCTGACT
CAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_b14.g1 MSMg01no149_b14.g1 CHROMAT_FILE:
MSMg01no149_b14.g1 PHD_FILE: MSMg01no149_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:14 2005
         (558 letters)



>mm_chr14_51575011_51575968
          Length = 958

 Score =  969 bits (501), Expect = 0.0
 Identities = 550/579 (94%), Gaps = 21/579 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgacagccagccagagctatacagagaaactctgtcttgaaaaaaaaaaaaaa--gtt 58
           |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||  |||
Sbjct: 180 catgacagccagccagggctatacagagaaactctatctcgaaaaaaaaaaaaaaaagtt 239

                                                                       
Query: 59  ctcaaagttagcagaatttttggactccgtactgtgtgtccaatcaacttgccatcctgt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctcaaagttagcagaatttttggactccgtactgtgtgtccaatcaacttgccatcctgt 299

                                                                       
Query: 119 ttatgcctactatctagaactcatttccatctgggtctcgaagtgtttccccaaaatcct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttatgcctactatctagaactcatttccatctgggtctcgaagtgtttccccaaaatcct 359

                                                                       
Query: 179 gcaggctcctagtcagcactgttacccacccagcaaccacttccctaatcccgaaagcag 238
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 360 gcaggctcctagtcagcactgttacccacccagcaaccgcttccctaatcccgaaagcag 419

                                                                       
Query: 239 ctcagatactgtttcgtttcattttatttcaagattgcgcaatctatgaaaaaattgaat 298
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 420 ctcagacactgtttcgtttcattttatttcaagattgcacaatctatgaaaaaattgaat 479

                                                                       
Query: 299 tttttcgcttttcaaattcttatccaataacgcagcggagaatggagttgcagataggca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttttcgcttttcaaattcttatccaataacgcagcggagaatggagttgcagataggca 539

                                                                       
Query: 359 gttccggggctctctaccctgcttctctttccacacaggcctccttttctagctgggaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gttccggggctctctaccctgcttctctttccacacaggcctccttttctagctgggaaa 599

                                                                       
Query: 419 tcatgactgtgtgcggggg-------------------atcacctgctggtggccttaga 459
           |||||||||||||||||||                   ||||||||||||||||||||||
Sbjct: 600 tcatgactgtgtgcgggggtggggtggggtggggggggatcacctgctggtggccttaga 659

                                                                       
Query: 460 ctaggagtggatctctttgaaatgaactctagagaggtttcctgccacacctctggatga 519
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 660 ctaggagtggatctctttgaaatgaactctggagaggtttcctgccacacctctggatga 719

                                                  
Query: 520 gggtgtgtcaccttggagacaaggctgctgccattggtt 558
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 720 gggtgtgtcaccatggagacaaggctgctgccattggtt 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)