BAC Information

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BAC

Clone NameMSMg01-149I20
Chromosome14 (Build37)
Map Location 19,043,605 - 19,044,062
singlet/doubletsinglet
Overlap geneNr1d2
Upstream geneThrb, LOC627608
Downstream geneLOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I20.T7 (MSMg01no149_i20.b1)MSMg01-149I20.TJ (MSMg01no149_i20.g1)
ACCAG352241AG352242
length704689
length of high quality
(start - end)
589 (48 - 636)571 (77 - 647)
definitionCHROMAT_FILE: MSMg01no149_i20.b1 PHD_FILE: MSMg01no149_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:52 2005CHROMAT_FILE: MSMg01no149_i20.g1 PHD_FILE: MSMg01no149_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACCAGATTTTCAAACAAGAGTTAATGTCAATACATCTCAAAT
TATTCCAGAAAATAGAAACAGAAGGAGCACTGCCTAGTTCATTTCCAAAC
TATGTAAAGACCCAACAAACAAAGAGAATAACAAACTAATTTCCCATATA
AACATAAATGCATAATTTCTCAATAAAATATTTACAAACCAAATCCAAAA
ACATATCAAAAAGATCATCCATCATAACCAAGTAGGCTTCATCCCAGAGA
TGCAAGAATGGTGCAACATGCATTGAGAAGTATAATCCACCATATAAACC
GAAATCCACCATATAAAGTGAAAGACAAAGCTACACGGTCATCTCACCCG
ATGCAGAAATGGCCTTTATACCCCTCTATGATAAAAGTCTTGGAAAGATT
GAAGATACAAGAGACATACCTCAAAATAGTAAAACAGTTTACACCAAAAG
CATAACCAAAATCAATTTAAGTGGAGAGAAACTCAAAGCAATTCCACTAA
AATCAGGATCAAGACGAAGTTGCTCACTCTCTTCATAACTATTCAGTATA
GTATTTGAAGTCTTATCTAGAGCAATAAGACAACTGAAAGAGATCAAGGA
GATACCCTTTGAAAGGGAAGAAGTCAAAGTATCTTTATTTGCAAATAATA
TGAT
NTTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAAGGGAGGGACAGGTACATT
GAGCTACTTGCGACTAGAGTGTTCAATTCTGTGACCCCAGCATGTAAGTT
ACAGGTTCTGCCGGTAGTTTCAGGTGTAGATGTATTGGTTTTTGCTTAGT
GTTAGACACCCAAAAGCTGAGTCTAATGTTTACTATATTGAATACAGAAT
AAATAAGGAGAGTGGGTTGTGTGTGGCATGGTGGTGCATGCCTTTAGGCC
TAACTTTTAGGAGGTAGAGGCAGGTGAATCTGAGTTCCAGGCAAGCCAGG
GCTACATAGTGAAATCCTGTGTTTCCAAAACAAGCAAAAGTAAGTACCCC
CAAAACCCAAGAAAGGAGACTGGCAAATGGTTTTTACTTTACGAGAATAT
AGAATATTCAGCGACTCAGTAGACATCTCTATGCTGCCCTTTCTCCTCAG
ATCCTTGGCAGCTTGTCCTCAGTCACTGCTTTTAAGATAAGGTTTTGAGT
AGTCCAGATTGCCTCAATTCCAAGTTCTCTCCCAGTTGATGAGTTTGGGG
TGTGTTGCTGTGTCCTCCTGAGTTTGGGGTGTGCCACTGTGTCATCCTTC
TGCCACTGCTTTTTCCCTTTTTTCATCCAGGCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i20.g1 MSMg01no149_i20.g1 CHROMAT_FILE:
MSMg01no149_i20.g1 PHD_FILE: MSMg01no149_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:52 2005
         (571 letters)



>mm_chr14_19043092_19044062
          Length = 971

 Score =  870 bits (450), Expect = 0.0
 Identities = 456/458 (99%)
 Strand = Plus / Minus

                                                                       
Query: 114 ttttgcttagtgttagacacccaaaagctgagtctaatgtttactatattgaatacagaa 173
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ttttgcttagtgttagatacccaaaagctgagtctaatgtttactatattgaatacagaa 912

                                                                       
Query: 174 taaataaggagagtgggttgtgtgtggcatggtggtgcatgcctttaggcctaactttta 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 911 taaataaggagagtgggttgtgtgtggcatggtggtgcatgcctttaggcctagctttta 852

                                                                       
Query: 234 ggaggtagaggcaggtgaatctgagttccaggcaagccagggctacatagtgaaatcctg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ggaggtagaggcaggtgaatctgagttccaggcaagccagggctacatagtgaaatcctg 792

                                                                       
Query: 294 tgtttccaaaacaagcaaaagtaagtacccccaaaacccaagaaaggagactggcaaatg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgtttccaaaacaagcaaaagtaagtacccccaaaacccaagaaaggagactggcaaatg 732

                                                                       
Query: 354 gtttttactttacgagaatatagaatattcagcgactcagtagacatctctatgctgccc 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtttttactttacgagaatatagaatattcagcgactcagtagacatctctatgctgccc 672

                                                                       
Query: 414 tttctcctcagatccttggcagcttgtcctcagtcactgcttttaagataaggttttgag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tttctcctcagatccttggcagcttgtcctcagtcactgcttttaagataaggttttgag 612

                                                                       
Query: 474 tagtccagattgcctcaattccaagttctctcccagttgatgagtttggggtgtgttgct 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tagtccagattgcctcaattccaagttctctcccagttgatgagtttggggtgtgttgct 552

                                                 
Query: 534 gtgtcctcctgagtttggggtgtgccactgtgtcatcc 571
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgtcctcctgagtttggggtgtgccactgtgtcatcc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)