BAC Information

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BAC

Clone NameMSMg01-150I05
Chromosome14 (Build37)
Map Location 75,531,171 - 75,531,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik
Downstream geneLOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I05.T7 (MSMg01no150_i05.b1)MSMg01-150I05.TJ (MSMg01no150_i05.g1)
ACCAG352930AG352931
length739734
length of high quality
(start - end)
230 (42 - 271)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no150_i05.b1 PHD_FILE: MSMg01no150_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:05 2005CHROMAT_FILE: MSMg01no150_i05.g1 PHD_FILE: MSMg01no150_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATTCCTGGAATAAAACCTACTTGGTCACGATGGATGATTGCTTTAAT
GTGATCTTGGATTCGGTTAGTGAGAATTTTATTGAGGATTTTTGCCTCGA
TATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTC
TGTGGCCCATGTATCAGAGCAATAGCGGCTTCCCACAATGACTCGGGCAG
AGTATTTTCTCCCCCCACCCCGCGACCAACTTTGTGCCCATCTGCCCCCT
ACTCTCCTCTTTGACCCCCCGCCTATTTTCTGTTTTTCCCCTCTTCCGCT
TCCCGCCATTTTTCCTGTCCCTCCCCCCCTATCTTTTTCCGCTCCCCATT
TCCCCCATCCCCCTTTTCGTTTTCCCTCCCCCCCCTATTTTTCCCCCTCT
CCCCCTCCTATTCCCTCCCCTCTTTTTTCCGCCCCCCTTCTCCCCCTTTT
TTCCCCCCTCTTTTTTTTTTCTCCCCCCCCTTTCCTTTTCTCCTTTCCCC
TCCTCTCATATTCTCCCTCCCCCCCCCCCCCCCCTTCTC
TGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTGGATTTTCCCGTCTCTGTA
ATAGGTTCTTTCCAGTTTTCGTTCTCAAATCTCCAGAGAAGCAAGCACAT
ACAGGCAAACAAGCGCGGTATATCTACCACTGAACATGGAGACAGCACCA
ACACCGGTAATCACAGCCAACCACCTTGACAGTGAGACCTGGGTGTCCTT
TTAAAGAGCTTTGGAACCACTCACTGCCTTACAGCTCTCGGTTCCCACAC
AGTTCCACTTCCACCAAGAACTTTAAAAACAGAAAGACAAACCAGGTTGC
ACCCAAGAGACAAGAAGGAAAACAGAACGTGCGATTTGGAGACAAGGGTT
TTACTGCAAAATGAGCCCCCCCCGGCCAGCTGCCCAAAAGTGTAGCCGTA
TTAGAAAATGCCAACCCAGTCTCCAGACACCGGTGTCAAGTCATGGAGAA
AAGTAAGTAAATAATAGTGGCCACTGTTTTAAGAGTAAGAATAGTAATAA
CGATTGTCACCACAGCCTTCCGTACAGCTACACGTGGAGCCACTCCTCCC
GGCTCCACCACTTCAGCCTCCGGGCATCCTGCGCTGCCCGCAGCAGAATT
AGGGGCCACTGGCCTAAGGTGGCGAAATCCGTGGGTGCATCGAGTGGCCG
CCGCACATGCCCTCCCCTCCCCCCCTCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i05.g1 MSMg01no150_i05.g1 CHROMAT_FILE:
MSMg01no150_i05.g1 PHD_FILE: MSMg01no150_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:05 2005
         (337 letters)



>mm_chr14_75530971_75531707
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggattttcccgtctctgtaataggttctttccagttttcgttctcaaatctccagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gttggattttcccgtctctgtaataggttctttccagttttcgttctcaaatctccagag 478

                                                                       
Query: 61  aagcaagcacatacaggcaaacaagcgcggtatatctaccactgaacatggagacagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagcaagcacatacaggcaaacaagcgcggtatatctaccactgaacatggagacagcac 418

                                                                       
Query: 121 caacaccggtaatcacagccaaccaccttgacagtgagacctgggtgtccttttaaagag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 417 caacaccggtaatcacagccaaccaccgtgacagtgagacctgggtgtccttttaaagag 358

                                                                       
Query: 181 ctttggaaccactcactgccttacagctctcggttcccacacagttccacttccaccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctttggaaccactcactgccttacagctctcggttcccacacagttccacttccaccaag 298

                                                                       
Query: 241 aactttaaaaacagaaagacaaaccaggttgcacccaagagacaagaaggaaaacagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aactttaaaaacagaaagacaaaccaggttgcacccaagagacaagaaggaaaacagaac 238

                                                
Query: 301 gtgcgatttggagacaagggttttactgcaaaatgag 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtgcgatttggagacaagggttttactgcaaaatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)