BAC Information

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BAC

Clone NameMSMg01-150I19
Chromosome14 (Build37)
Map Location 80,237,695 - 80,405,405
singlet/doubletdoublet
Overlap geneEG629734, Olfm4
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I19.T7 (MSMg01no150_i19.b1)MSMg01-150I19.TJ (MSMg01no150_i19.g1)
ACCAG352958AG352959
length784792
length of high quality
(start - end)
247 (64 - 310)236 (72 - 307)
definitionCHROMAT_FILE: MSMg01no150_i19.b1 PHD_FILE: MSMg01no150_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:08 2005CHROMAT_FILE: MSMg01no150_i19.g1 PHD_FILE: MSMg01no150_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,237,695 - 80,237,941)(80,405,170 - 80,405,405)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAGAGAATCCGCGGAATTCTCCGAT
GTCTGCCGACAGGATGCACATTACAGAAGCTGTGTATAACAGACTTGCTT
TAGAGCAAAGCTCTCCTTTTAGCTGAAATTTGTTATTTAAAAGATTATTT
ATTCCCCACTTTGAAATAGCTCCTTCCTAGCCTTTGACAGGGCTCTGCCG
CCTGGCTGACATCAGTTCCACCAGGCAGCACGAGAGGCTTAAAATCAGAC
CTCAGGAAGCCATCAGCTCATCGAGTAAATGATAAATCATCCCAAATGCA
TACTGAGCAGGTATCTGTGATGTTTCTAAAGCACAGACAAAACTGCTGTT
AGGTCTGTCCTTGCAGTTACCCTGGGTCACGATGCAGTAGCATTTGGGTG
CTCTCCCCCCCTTAATATCCGCCCCTATCCGCGTCCCGCCAGAATACCGT
TTCCACCGCCGATGCCCCTTTCACACCCCCGTCCCTTTACTGCTTGTTCC
ACTCCTTCCCCCGTCCCCCCCTTGCCTCGCCTCCCTCCTCGCCCTTTCTT
CTTTTCCCCTTCTTTTCCCCCCCCTTCCCCTCTTTTCCTTTTCCCTCCCC
CCTCCTCTTTTTCCCCCCCTCTCTCTTCTCCTTTTACCCTTTCCCTTATT
TTTTCCCCCCCCTCTTCTCCTCCCTTTTTTTTCCCCCCTTTTTTTTTTCT
TTCTCTCCCCCCCCTTTCCTCTTTTCCCCCTTACCCCTCCCCTCGTTCTC
TCCCCCTCCCCTCTCCCCCCCCTCCCCTTCTTCA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCGACATCAAACTCTCCTCTTCAGCTGGGAAATTATAAA
ATTTGCATTTTTTTCCAAATGGAAACAAGCCATCTATTTACTCAAAAACT
GAGCAGTGTATGAGTTTGTATCTCGCTCACAAATTTCTCTAAGCTTACCA
CTTGCAAAGAAAAAAAATTAAAGTATCTGAAGTTTCTTTAAGATATTCAG
GCTCTTTCTTCGATGCCACTGCATATTTTAAAGTGACAGGTTTGAAAGAT
TCTGTTTTCCTTCCGACCTTCNTTAACTACCCCCAGGGGACCCTAGCACA
ACCAACATTTTTTTTTACCCCCCCCGCCTTGCAGAACGATTTTTGTCAGT
CAATTGGTTGACCCCCCCATTGATTTCATCACAAGTCCAGCCCAAAGTTC
ACCTATCGCATTATCACCCCTGATCGCACTCTCCATTAAATTCAACTACC
ACACCCCCCGTCCTCTTCCATTTATTCTCTTCTCACTCCCTCTCCTCCCC
CTCTCTCTCTTTCCCTCCCCCCCCTTCTCCCTCTTATTTTCCCCCATTTT
ACCCACGACCCACCTCTTAATCCACCCCTCTTCCCACTTTCTTACCCACC
TCATATTTTTTTTCTGCACTCCCTCTGTCCTCCCCCCCCTTTTTTTTTTT
TCTTTCTCTTAATCAACGCTCCCTCCGCCCTCCCCTCCTTTATCTCCATA
TTCTCACCATATTCCTCCCTTCCCGCCCCTTTCTTCCCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i19.b1 MSMg01no150_i19.b1 CHROMAT_FILE:
MSMg01no150_i19.b1 PHD_FILE: MSMg01no150_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:08 2005
         (247 letters)



>mm_chr14_80237495_80238141
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcacattacagaagctgtgtataacagacttgctttagagcaaagctctccttttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcacattacagaagctgtgtataacagacttgctttagagcaaagctctccttttagc 260

                                                                       
Query: 61  tgaaatttgttatttaaaagattatttattccccactttgaaatagctccttcctagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaatttgttatttaaaagattatttattccccactttgaaatagctccttcctagcct 320

                                                                       
Query: 121 ttgacagggctctgccgcctggctgacatcagttccaccaggcagcacgagaggcttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgacagggctctgccgcctggctgacatcagttccaccaggcagcacgagaggcttaaa 380

                                                                       
Query: 181 atcagacctcaggaagccatcagctcatcgagtaaatgataaatcatcccaaatgcatac 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 atcagacctcaggaagccatcagctcatcgagcaaatgataaatcatcccaaatgcatac 440

                  
Query: 241 tgagcag 247
           |||||||
Sbjct: 441 tgagcag 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no150_i19.g1 MSMg01no150_i19.g1 CHROMAT_FILE:
MSMg01no150_i19.g1 PHD_FILE: MSMg01no150_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:08 2005
         (236 letters)



>mm_chr14_80404970_80405605
          Length = 636

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctcctcttcagctgggaaattataaaatttgcatttttttccaaatggaaacaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 436 actctcctcttcagctgggaaattataaaatttgcatttttttccaaatggaaacaagct 377

                                                                       
Query: 61  atctatttactcaaaaactgagcagtgtatgagtttgtatctcgctcacaaatttctcta 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 376 atctatttactcaaaaactgagcagtgtatgagtttgtatctcactcacaaatttctcta 317

                                                                       
Query: 121 agcttaccacttgcaaagaaaaaaaattaaagtatctgaagtttctttaagatattcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcttaccacttgcaaagaaaaaaaattaaagtatctgaagtttctttaagatattcagg 257

                                                                   
Query: 181 ctctttcttcgatgccactgcatattttaaagtgacaggtttgaaagattctgttt 236
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctcacacttcgatgccactgcatattttaaagtgacaggtttgaaagattctgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)