BAC Information

Click to search

BAC

Clone NameMSMg01-151B02
Chromosome14 (Build37)
Map Location 104,626,759 - 104,627,254
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B02.T7 (MSMg01no151_b02.b1)MSMg01-151B02.TJ (MSMg01no151_b02.g1)
ACCAG353334AG353335
length720724
length of high quality
(start - end)
108 (50 - 157)494 (71 - 564)
definitionCHROMAT_FILE: MSMg01no151_b02.b1 PHD_FILE: MSMg01no151_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:47 2005CHROMAT_FILE: MSMg01no151_b02.g1 PHD_FILE: MSMg01no151_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGAA
TTCAGTGTGTCTCCACCTTTGCGCATGCATCTGAAGAATATTAGTGTNGA
TCAAGACAAGGATTCACGGATTAAGACATCCATGGATCGACTGAGGCACG
AGGTCCNTCTTCAGATAGATTACTCACAAGCCCATGCTGNTAAGTGCCAC
GCAGAACTGTATAACCACATGGNCAAAGGAAATGATACTTTTCTGGAAAA
TAAGTCTTTAAAGGATGAGTTAGGAATCCAAAAAGTTTACCAAGGTTGGG
GCAAGCGAACTATTTAAGNCTCTGGGGAAATCTAAAATTGGGCTTTGAAA
ACCCAAAAAAAAGGAAAAGCTTTTTCCCCCCGGTCAAAAAGAGCCCTCCA
CTTTAACCAATAATAAAAAGAAAGGTTTGGGGAAATAACCCCCGGAAATT
TTGGAGCCCTTTGGTTTTTTTAAGGGGGGAGGGGCTTTTATTGGGTTTGT
GGGAAAAAAAATCTCCCAAAAATGTGGCCTTCCCCTCTCCGGGAGTGGGG
GGGAGGAGGGGGCCCCCCCTTTTTTGGGGGGGAAATTTCGTGTTTTATAA
AAAAAAAGGGGGGNCCNNGGGGGGGGGGCGGGGGGGAAAATAAAAAAAAT
AAAAAAAATACAAACCCCTTCTGGTTTTNCTAAACCACAACTTTTTTTAT
ATTCTGCCGTGTTGTGCGTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGGGCTTGATAGTTAGCCAATCTATCTA
GTCCATGGGCTCTGAGGACAGGGAGAGATGTCTCAAAAGAAAATGCAGAG
AATAAATTGAATAAGACACTTGAAGTGACTCTTGGTCTCCAAGTATAGGC
ACAAACACAAGAGACTACTAAAGAAAATTAAAGTGGCATATGTCCCTGAA
ATCTAAAACCTGCATATCAGGGGAAGACATGTTTCTGAAAGACCATTTTT
TTGTCACTTCTGTTATAGCAAAAGTGTCTTAGATAAATGTCAAGCTGTAG
CCATCACACAGTTGATGGAGAAGAGAGCCAAAGAGCAGATGTCATTGCTT
CAGGGCTGTCGTCTGTCGTGCACCCCCAGGACCCCCGCCCTGTATATGGC
TTTAAAGCTGTAACCTACAACTTCCAGAGAAACTGAAGGAAGGCAGGAAG
GATAAGTCAGAAAGGGAAGGAGACACTCTCCATCTTTCAAATAGCCACCA
ATTCTCACTACAGTTTAAGATTTGCCTCACGGCCATAATGGCTGAAGATA
AATGTGTGGCTTTCATAAGACTGTATCTATTTCAATTTGACATTAAAGTG
GAATTCATTCAGAAATTATGAACTCCCTGGGGCTTCCCCTTTTGCTAAAG
GCCTTTTCTTAACCGGATTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b02.g1 MSMg01no151_b02.g1 CHROMAT_FILE:
MSMg01no151_b02.g1 PHD_FILE: MSMg01no151_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:47 2005
         (494 letters)



>mm_chr14_104626420_104627315
          Length = 896

 Score =  940 bits (486), Expect = 0.0
 Identities = 493/496 (99%), Gaps = 2/496 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggggcttgatagttagccaatctatctagtccatgggctctgaggacagggagagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ctggggcttgatagttagccaatctatctagtccatgggctctgaggacagggagagatg 776

                                                                       
Query: 61  tctcaaaagaaaatgcagagaataaattgaataagacacttgaagtgactcttggtctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tctcaaaagaaaatgcagagaataaattgaataagacacttgaagtgactcttggtctcc 716

                                                                       
Query: 121 aagtataggcacaaacacaagagactactaaagaaaattaaagtggcatatgtccctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aagtataggcacaaacacaagagactactaaagaaaattaaagtggcatatgtccctgaa 656

                                                                       
Query: 181 atctaaaacctgcatatcaggggaagacatgtttctgaaagaccatttttttgtcacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atctaaaacctgcatatcaggggaagacatgtttctgaaagaccatttttttgtcacttc 596

                                                                       
Query: 241 tgttatagcaaaagtgtcttagataaatgtcaagctgtagccatcacacagttgatggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgttatagcaaaagtgtcttagataaatgtcaagctgtagccatcacacagttgatggag 536

                                                                       
Query: 301 aagagagccaaagagcagatgtcattgcttcagggctgt--cgtctgtcgtgcaccccca 358
           |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 535 aagagagccaaacagcagatgtcattgcttcagggctgtgtcgtctgtcgtgcaccccca 476

                                                                       
Query: 359 ggacccccgccctgtatatggctttaaagctgtaacctacaacttccagagaaactgaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggacccccgccctgtatatggctttaaagctgtaacctacaacttccagagaaactgaag 416

                                                                       
Query: 419 gaaggcaggaaggataagtcagaaagggaaggagacactctccatctttcaaatagccac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaaggcaggaaggataagtcagaaagggaaggagacactctccatctttcaaatagccac 356

                           
Query: 479 caattctcactacagt 494
           ||||||||||||||||
Sbjct: 355 caattctcactacagt 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 896
Length adjustment: 10
Effective length of query: 484
Effective length of database: 886
Effective search space:   428824
Effective search space used:   428824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)