BAC Information

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BAC

Clone NameMSMg01-153D21
Chromosome14 (Build37)
Map Location 114,020,309 - 114,126,911
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153D21.T7 (MSMg01no153_d21.b1)MSMg01-153D21.TJ (MSMg01no153_d21.g1)
ACCAG354896AG354897
length720725
length of high quality
(start - end)		677 (44 - 720)645 (75 - 719)
definitionCHROMAT_FILE: MSMg01no153_d21.b1 PHD_FILE: MSMg01no153_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:34 2005CHROMAT_FILE: MSMg01no153_d21.g1 PHD_FILE: MSMg01no153_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,126,238 - 114,126,911)(114,020,309 - 114,020,953)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAACCGCGGAA
TTCTTTCTTTCTTCCAGCTCCTTGTTTGCTCCTTTGTACTGCTTAGCTTG
TAAATCAGTGGCCTTCAGGCATGCCCTCAGCTTTACCTATTTCAGAGAAA
GGTCAGACCTTTCTGCTTTTCTATGTAGGAAGGACTTGTTCAATAGCCCT
GCATCAGATGGCTGCCTGGGGTCTTACTAACCATGAGGGGCTGCAGCGCT
CTGTTGAAGCTGACTTTGATCTAACTGTTTTCTCTAAAAGGAGATTTTTC
CGTCCAATTCTTGACTATGTTGTGTTTCTATTGATGACTCTGGTATGAAA
TTAATGGACTCATGTGCTTGGAGTCTTGCTCAGGATTGGCAAATATTTGC
TATTATGCTGTAGAAGTTAAACCAAGATTAAGGGAATTGTGAAACTGCAA
CATTAATCTGACTTCTGTGATTAATAGATGTTTTAAGTCAATAATTTCAT
GGTAAGAAAATTTGAGAAGGGCAACCAAGTATAGCTATTCATTTCTGTAA
TCACAAAACTTAATCGAGGAAATAATATTAGTTTGATCTCAACCTGTGAA
TCATTACCCCTTTGGGCCTGCATATATTACATATTTACATTACAATTATG
AATTTATGAAAAATTTATAAGAGTAGCAAAATTATAGTTATGAAATAGCA
GCAGAATAATTTTATGACTG

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTAAACAAATTCCAATAATAAAAA
CACAGAAAGGTTATAAAGAAGGAATTTCAACATTTATCACTACCTAAAGT
TTTAATAAAGCTAATTAAAATCCTTTCTCATTTTCACAGAAGGTAATAGT
TTCAATCAAGTGTCTAATAACTCTTTCAAAAACCTATTAAAATAGCAATG
TGTTTTTATACCAAGTATCAATTTTCAGCTTGATTTAGCTACCAAAATTT
TAAGAGTAAAATATTAACTACTTATCACATGAGTTATACCAGAGGCATCT
ATAAGTTGCTGTTTATAGAGTAAAGTGTATTTAAATATTTAATTTGGAAC
TACTCAGAACTATGACAATATTTGGAGGATAATCTGCTCTTCCCTTTGGC
TGAAGGCATGCCACCTGTTAGCATATACACTACCTGTTAATGGTTATAAA
GTCGCACTTACAGTGTCTTGAACACAAAGAGAGGTAAACATTGTAAGTAG
AAAGTTGGAGCTGCTTGCTCTTCTGGCAGATCATTGGGTTAATACTCACT
GCCCTCAGACCTTCATTTGATAAAGATTTCCTCACCATTAACTGTGAATC
AAGTTCCAGTGTTCATTGTTCTTTCTTAGATCTTCAGTTTTTAACCTCTG
GAAGTTTAGAGTCTTGTGGTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_d21.b1 MSMg01no153_d21.b1 CHROMAT_FILE:
MSMg01no153_d21.b1 PHD_FILE: MSMg01no153_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:34 2005
         (677 letters)



>mm_chr14_114126169_114127245
          Length = 1077

 Score = 1257 bits (650), Expect = 0.0
 Identities = 668/674 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttctttcttccagctccttgtttgctcctttgtactgcttagcttgtaaatc 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaattctttctttcctcaagctccttgtttgctcctttgtactgcttagcttgtaaatc 684

                                                                       
Query: 64  agtggccttcaggcatgccctcagctttacctatttcagagaaaggtcagacctttctgc 123
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggtggccctcaggcatgccctcagctttacctatttcagagaaaggtcagacctttctgc 624

                                                                       
Query: 124 ttttctatgtaggaaggacttgttcaatagccctgcatcagatggctgcctggggtctta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttttctatgtaggaaggacttgttcaatagccctgcatcagatggctgcctggggtctta 564

                                                                       
Query: 184 ctaaccatgaggggctgcagcgctctgttgaagctgactttgatctaactgttttctcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctaaccatgaggggctgcagcgctctgttgaagctgactttgatctaactgttttctcta 504

                                                                       
Query: 244 aaaggagatttttccgtccaattcttgactatgttgtgtttctattgatgactctggtat 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaggagatttttccatccaattcttgactatgttgtgtttctattgatgactctggtat 444

                                                                       
Query: 304 gaaattaatggactcatgtgcttggagtcttgctcaggattggcaaatatttgctattat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaattaatggactcatgtgcttggagtcttgctcaggattggcaaatatttgctattat 384

                                                                       
Query: 364 gctgtagaagttaaaccaagattaagggaattgtgaaactgcaacattaatctgacttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctgtagaagttaaaccaagattaagggaattgtgaaactgcaacattaatctgacttct 324

                                                                       
Query: 424 gtgattaatagatgttttaagtcaataatttcatggtaagaaaatttgagaagggcaacc 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 323 gtgattaatagatgttttaagtcaataatttcatggtaagaaaatttgagaaggccaacc 264

                                                                       
Query: 484 aagtatagctattcatttctgtaatcacaaaacttaatcgaggaaataatattagtttga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagtatagctattcatttctgtaatcacaaaacttaatcgaggaaataatattagtttga 204

                                                                       
Query: 544 tctcaacctgtgaatcattacccctttgggcctgcatatattacatatttacattacaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tctcaacctgtgaatcattacccctttgggcctgcatatattacatatttacattacaat 144

                                                                       
Query: 604 tatgaatttatgaaaaatttataagagtagcaaaattatagttatgaaatagcagcagaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tatgaatttatgaaaaatttataagagtagcaaaattatagttatgaaatagcagcagaa 84

                         
Query: 664 taattttatgactg 677
           ||||||||||||||
Sbjct: 83  taattttatgactg 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no153_d21.g1 MSMg01no153_d21.g1 CHROMAT_FILE:
MSMg01no153_d21.g1 PHD_FILE: MSMg01no153_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:34 2005
         (645 letters)



>mm_chr14_114020109_114021153
          Length = 1045

 Score = 1185 bits (613), Expect = 0.0
 Identities = 637/645 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaaacaaattccaataataaaaacacagaaaggttataaagaaggaatttcaacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattaaacaaattccaataataaaaacacagaaaggttataaagaaggaatttcaacatt 260

                                                                       
Query: 61  tatcactacctaaagttttaataaagctaattaaaatcctttctcattttcacagaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcactacctaaagttttaataaagctaattaaaatcctttctcattttcacagaaggt 320

                                                                       
Query: 121 aatagtttcaatcaagtgtctaataactctttcaaaaacctattaaaatagcaatgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagtttcaatcaagtgtctaataactctttcaaaaacctattaaaatagcaatgtgtt 380

                                                                       
Query: 181 tttataccaagtatcaattttcagcttgatttagctaccaaaattttaagagtaaaatat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tttataccaagtatcaattttcagcatgatttagctaccaaaattttaagagtaaaatat 440

                                                                       
Query: 241 taactacttatcacatgagttataccagaggcatctataagttgctgtttatagagtaaa 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 taactactcatcacatgagttataccagaggcatctataagttgctgtttttagagtaaa 500

                                                                       
Query: 301 gtgtatttaaatatttaatttggaactactcagaactatgacaatatttggaggataatc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gtgtatttaaatatttaatttggaactactcagaactatgacaatatttggaagataatc 560

                                                                       
Query: 361 tgctcttccctttggctgaaggcatgccacctgttagcatatacactacctgttaatggt 420
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tgctcttccctttggctggaggcatgccacctgttagcatgtacactacctgttaatggt 620

                                                                       
Query: 421 tataaagtcgcacttacagtgtcttgaacacaaagagaggtaaacattgtaagtagaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaagtcgcacttacagtgtcttgaacacaaagagaggtaaacattgtaagtagaaag 680

                                                                       
Query: 481 ttggagctgcttgctcttctggcagatcattgggttaatactcactgccctcagaccttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 ttggagctgcttgctcttctggcagatcattgggttaatactcactgccctcagaccctc 740

                                                                       
Query: 541 atttgataaagatttcctcaccattaactgtgaatcaagttccagtgttcattgttcttt 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 atttgataaagatttcctcaccattaactgtgaatcaggttccagtgttcattgttcttt 800

                                                        
Query: 601 cttagatcttcagtttttaacctctggaagtttagagtcttgtgg 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttagatcttcagtttttaacctctggaagtttagagtcttgtgg 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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