BAC Information

Click to search

BAC

Clone NameMSMg01-153M16
Chromosome14 (Build37)
Map Location 75,026,249 - 75,026,559
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043734, EG629578, LOC629583
Downstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153M16.T7 (MSMg01no153_m16.b1)MSMg01-153M16.TJ (MSMg01no153_m16.g1)
ACCAG355281AG355282
length725727
length of high quality
(start - end)
577 (35 - 611)594 (64 - 657)
definitionCHROMAT_FILE: MSMg01no153_m16.b1 PHD_FILE: MSMg01no153_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:15 2005CHROMAT_FILE: MSMg01no153_m16.g1 PHD_FILE: MSMg01no153_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAATTCCTGATC
TTTTTGCCTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTC
AGCATCTAAGGAGATGGGCATGTGTTTTTGCCTTTGAGTTTGTTTATATA
GTGGATTACGTTGATGGATTTCTGTATATTATACCATCCCTTCATCCCTG
GGATGAAGCCTACTTGGTCATGATGGATGATCATTTTGATGTGTTCTTGG
ATTCAATTTGTGAAGATTTTATTGAGTATTTTTGCATCGATATTCATAAA
GGAAATTAGTCTGAAGTTCTCTTTCTTTGTTGGATCTTTGTGTGGTTTAG
GTATCAGAGTAATTGTGGCTTCATAGAATGAATTGTGTAGAGTACCTTCT
GTTTCTATTTTGTGGAATAGTTTGAGAAGTGTTGGAATTAGGTCTTCTTT
GAAGGTCTGATAGAACTCTTCACTAAACCCATCTGGTCCTGGGCTTTTTT
TTTTATTATTATTATTATTTTGGTTGGGAGACTATTTATGACTGCTTCTA
TTTCTTTAAGAGAAATGGGACTGCTTAGATCATTAATCTGATCCTGATTT
AACTTTGGTACCTGGTATCTGCCTAGTAAGTTGCCCATTTCATTCAGGTT
TTCTTAGTTGTTGACTATACCTTTTTGATAAAGATCTGATGGAGCTTCCG
ATTTCCTAATGCTTTATTGTTTATT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGAGAATTTCACACAATGTATTTTTATAATATGCA
CCCATCCTCGCCCTTCCCTTGAACCTTTCAGTTCACATCATCGTTTGTTA
GAGGGCGCCACCCTGCTGCAAGTAGTTGATGTAGATGCTGTGTTGTAAAT
GTGCATTGATAAGGCATGGACCCCTTTGGTTAGTCCTCTGCAGTTTGACT
ACTTGTGACATAGATAATGGGTTCTTTCTATTGCATAAAGAAGCTTCCTT
GAGAGGCAAGAGCTACACTTGCCTGTGGATATAAGGAAAAGTAGTTAGAA
TGGAGTTAGCAGTTAGTACTGGTTAGGACAGTGGCAGTAGTGGGCTCTCC
TCTGGGCTCCGTGGCCTCACCAGCCATAGGTAGTTGGTTAATCTTACAGT
TCCAGATACGGATTCCTTCCTAGTGAGAAGGCATTAAGTCTCACTAAATG
GCCATTAGTTATCCCCAGCGTATGAATGCCACTATTTCGTCTTTAGAATA
TCTTGTTGCTCTGGTCATTGTTGTGGTTCATAGGCTTTACAGCTGGATAG
GACTCCTGACTGCTGGGGTATACACAGGCCCTTCTGATGCTATGTGAGCT
GTTCCTCACTATGCAAGCTATTCTCAGTGAGAAAGCTTCTAAGTCAGACC
ATATGCAAATTGATTCCTCCAAGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_m16.g1 MSMg01no153_m16.g1 CHROMAT_FILE:
MSMg01no153_m16.g1 PHD_FILE: MSMg01no153_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:15 2005
         (594 letters)



>mm_chr14_75026246_75027239
          Length = 994

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgagaatttcacacaatgtatttttataatatgcacccatcctcgcccttcccttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttgagaatttcacacaatgtatttttataatatgcacccatcctcgcccttcccttgaa 255

                                                                       
Query: 61  cctttcagttcacatcatcgtttgttagagggcgccaccctgctgcaagtagttgatgta 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 254 cctttcagttcacatcatcgtttgttagagggcaccaccctgctgcaagtagttgatgta 195

                                                                       
Query: 121 gatgctgtgttgtaaatgtgcattgataaggcatggacccctttggttagtcctctgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gatgctgtgttgtaaatgtgcattgataaggcatggacccctttggttagtcctctgcag 135

                                                                       
Query: 181 tttgactacttgtgacatagataatgggttctttctattgcataaagaagcttccttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tttgactacttgtgacatagataatgggttctttctattgcataaagaagcttccttgag 75

                                                                       
Query: 241 aggcaagagctacacttgcctgtggatataaggaaaagtagttagaatggagttagcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aggcaagagctacacttgcctgtggatataaggaaaagtagttagaatggagttagcagt 15

                      
Query: 301 tagtactggtt 311
           |||||||||||
Sbjct: 14  tagtactggtt 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)