Query= MSMg01no154_j01.b1 MSMg01no154_j01.b1 CHROMAT_FILE:
MSMg01no154_j01.b1 PHD_FILE: MSMg01no154_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:14 2005
(570 letters)
>mm_chr14_12536690_12537659
Length = 970
Score = 1013 bits (524), Expect = 0.0
Identities = 555/566 (98%), Gaps = 2/566 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgcatacccagggaagaccctggcaaacttatctgaggagcaaagcaagggg 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattcactgcagacctagggaagaccctggcaaacttatctgaggagcaaagcaagggg 703
Query: 65 aggaatcacatttgtgcagcaagtgaaataaagaggcctgctggcagcatccgtgggact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aggaatcacatttgtgcagcaagtgaaataaagaggcctgctggcagcatccgtgggact 643
Query: 125 gtggaactgatcaataatcttattagcgcacaactaggcatgcccatggtaaattctttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtggaactgatcaataatcttattagcgcacaactaggcatgcccatggtaaattctttt 583
Query: 185 tttaatagcatttattgctttttctgattatagaagccataaatatttgcagtcgaagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tttaatagcatttattgctttttctgattatagaagccataaatatttgcagtcgaagca 523
Query: 245 tacgcaggcaaagtatattaataagcacagtacattaaatagatgggtaagtacataaaa 304
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 522 tacgcaggcaaagtacattaataagcacagtacattaactagatgggtaagtacataaaa 463
Query: 305 agtataaacaagaaaataaaaataactataaccactgttcaaattttggtgtattttctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtataaacaagaaaataaaaataactataaccactgttcaaattttggtgtattttctc 403
Query: 365 ctgtgtatcaataatcaataggcctgggtttacaggatgtggaagtgtttcaaagggagt 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 402 ctgtgtatcaataatcaataggcctgggtttacagaatgtggaagtgtttcaaagggagt 343
Query: 425 tcatactaagctgggcactgtagtgatggcagcctaaggtcctttggaggcacaaacaga 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 342 tcatactaagctgggcactgtagtgatggcagcctaaggccctttggaggcacaaacaga 283
Query: 485 agcatctggaatggagagcaacctgggccactcagccacgcagtgcttcaaaaaggagtc 544
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 282 agcatctggaatggagagcaacctgggccactcagccatgcagtgcttcaaaaaggtgtc 223
Query: 545 agagctaacttaaaaaaaaatgggaa 570
||| |||||||||||||| ||||||
Sbjct: 222 agaactaacttaaaaaaa--tgggaa 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_j01.g1 MSMg01no154_j01.g1 CHROMAT_FILE:
MSMg01no154_j01.g1 PHD_FILE: MSMg01no154_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:14 2005
(422 letters)
>mm_chr14_12390851_12391673
Length = 823
Score = 669 bits (346), Expect = 0.0
Identities = 404/424 (95%), Gaps = 4/424 (0%)
Strand = Plus / Plus
Query: 1 attctgtcttttctggtgcagggaataaaagacatgtatttctagtaataaagcaaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtcttttctggtgcagggaataaaagacatgtatttctagtaataaagcaaagcc 260
Query: 61 aaggaagaagttctctgtgctcagttcttcccctgcacttgatccaggtcaaggcagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaagaagttctctgtgctcagttcttcccctgcacttgatccaggtcaaggcagtag 320
Query: 121 ccagtgcaggagagggaggggctcatggagtgaaccttgttctcagaagagcaggttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtgcaggagagggaggggctcatggagtgaaccttgttctcagaagagcaggttctc 380
Query: 181 agcaggcctgggatttggctttggtcgctgggctttgctcagcactaa-tgggatcatct 239
||||||||||||||||||||||||| ||||||||| | |||||||||| |||||| ||||
Sbjct: 381 agcaggcctgggatttggctttggttgctgggcttgggtcagcactaaatgggattatct 440
Query: 240 tctaccaaggttggtttctctggacctgcaggaagtggtgtctgtaatctttagattaca 299
||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 441 tctaccaaggttgccttctctggacctgcaggaagtgttgtctgtggtctttagattaca 500
Query: 300 gtcctccagcactcaggaggcagaggcaggaggatctctgtgagttcaaggttaacctgg 359
||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 gtccttcagcactcaggaggcagaggcaggaggatctctgtgagttcaaggtcagcctgg 560
Query: 360 tatacaaggtgagttccaggttgggtgggctcttttttata-agagaaaccctgtctcta 418
| |||||| ||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct: 561 tctacaagctgagttccaggttgggtgggctctttt--acacagagaaaccctgtctcga 618
Query: 419 aaac 422
||||
Sbjct: 619 aaac 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space: 336182
Effective search space used: 336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
