BAC Information

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BAC

Clone NameMSMg01-154M08
Chromosome14 (Build37)
Map Location 19,749,170 - 19,749,421
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154M08.T7 (MSMg01no154_m08.b1)MSMg01-154M08.TJ (MSMg01no154_m08.g1)
ACCAG355972AG355973
length683716
length of high quality
(start - end)
154 (219 - 372)254 (76 - 329)
definitionCHROMAT_FILE: MSMg01no154_m08.b1 PHD_FILE: MSMg01no154_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:30 2005CHROMAT_FILE: MSMg01no154_m08.g1 PHD_FILE: MSMg01no154_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCAACCTTTATTCCCTGAATGCGAATCCTACCTACCTCTCTATGAGAT
GAGGCTTTGTCTCACCTTACTAATTGCATAATGCATTACATCAAAATGTT
GCTGATCTTCATGGTGGTGATGCACACCACAGTCTCCAGGTAAATAGCTA
CACTGGCAGGTTTCAGGGTGTGTTGAAGTACTGTAACATACAAGGTGCCG
TGAGAGATTTTTAATATAAATTTGCAGGATTCCTCCACATTACATTTCAC
TATGGTCTTAAAAGTCATTTTGTAATGAAATACTATGGGTTCATGGATGC
ACATACACACACAAACATGAAGAACAGAGCACTTTGTGAGAGGAATGTTC
TTTCTACTATGTGCATTCCAAGGAAGATATTCAGGTGTCTACGCTTGGCA
GCAATTGATGAATACCTGACAATGATGAATACCTGCTCACCCATGTCATC
AGCTCATCAACTGATCATCTAAACCAAGGAATTTCATAAGCTCTATATTT
GTAGTTATGTTCAGTCTCTCTCTCCCCCCCCCTCTCTCTCTCTTTCTTTT
TCTCTCTCTTCCCGGTTTCTCCCCTGCCCCTTTTGGCGTGTAGGCCTCCT
CGAGAAGGTCTGCTTGCTTATGACCACATAAAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGGGCCCATTGTTCATGTTTTTGC
TTGGTTGCCCCAATGGCACAGGGTCTACTTTATCCCTCTTAGGTGGGGGG
TATGGAGGCAGGAAGTACATCAGATTCATGCTTGTCTCAATTCGATAAAG
GCAGGAAGTACCTGAGTAACATAATTCATGGCCATTCTCTGGTAATCCTG
GGTATGGACAAATTCAGTGCTCATTGTCTTAGCCAATATTTAATAAAGTA
TGTTTTAAATTTGCCTTAAAAATTGTGTATTGGGTAGGTGAGTGCGAGCT
CTACCCTATTCTATTTTTTCTCCCCCCCCTCCCACTTGACACTTTCTTCT
GATGTTTCCCCTCTTATTTCCCCCCAGACCTAAAATAAAACATCTCCGTT
TCCAGGATTCTTTTTTCCCTTTTCCCTCTATCTTTTATCTCTTCTTACAC
CGTTCTTTCCTTCTCTTTCCTTATTTTTTAATTTTCTATATATCTCTATC
TACTTTTTGTCCCATACCTCCCTTTTCACTATTTCTTTCCTCTCCCCCCT
TTTTATTCTTATTCTTTACTTTCCCTACCCTTCCATTCCCCCCCTTTCTT
TTTCCCCTTACACCTTTTATTCCTATTTCTCTTTCCATTTTCTCTTCTCT
TCTTTCTCATCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_m08.g1 MSMg01no154_m08.g1 CHROMAT_FILE:
MSMg01no154_m08.g1 PHD_FILE: MSMg01no154_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:30 2005
         (254 letters)



>mm_chr14_19748970_19749623
          Length = 654

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggcccattgttcatgtttttgcttggttgccccaatggcacagggtctactttatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tagggcccattgttcatgtttttgcttggttgccccaatggcacagggtgtactttatcc 260

                                                                       
Query: 61  ctcttaggtggggggtatggaggcaggaagtacatcagattcatgcttgtctcaattcga 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttaggtggggggtatagaggcaggaagtacatcagattcatgcttgtctcaattcga 320

                                                                       
Query: 121 taaaggcaggaagtacctgagtaacataattcatggccattctctggtaatcctgggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 taaaggcaggaagtacctgagtaacataattcatggccattctctgggaatcctgggtat 380

                                                                       
Query: 181 ggacaaattcagtgctcattgtcttagccaatatttaataaagtatgttttaaatttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacaaattcagtgctcattgtcttagccaatatttaataaagtatgttttaaatttgcc 440

                       
Query: 241 ttaaaaattgtg 252
           ||||||||||||
Sbjct: 441 ttaaaaattgtg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)