BAC Information

Click to search

BAC

Clone NameMSMg01-155A08
Chromosome14 (Build37)
Map Location 56,014,005 - 56,014,443
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729
Downstream geneEG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155A08.T7 (MSMg01no155_a08.b1)MSMg01-155A08.TJ (MSMg01no155_a08.g1)
ACCAG356153AG356154
length726726
length of high quality
(start - end)		411 (46 - 456)439 (78 - 516)
definitionCHROMAT_FILE: MSMg01no155_a08.b1 PHD_FILE: MSMg01no155_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:49 2005CHROMAT_FILE: MSMg01no155_a08.g1 PHD_FILE: MSMg01no155_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCATAAATTGTTGCCACCTGCCGGCCAGTAAACAGGGAAGCTTCTG
GTCTCTGCTCTCAGCACTGGAATTAAAGATGCCTGCCACAGGGCTGGTGA
GATGGCTCAGGGGTTAAGAGTACTGACTGCTCTTCCCGAAGGTCCTGAGT
TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCT
GATGCTCTCTTCTGGGGTGTCTGAAGACAGCTACAGTGTACTTATATACA
TAAAATAAATAAATATTTTAAAAAAAGAAAAGAAAAAATAATAAGAGAGC
CAGGCCTTATTTGGGAATTTCACATCATGCCCCCTGACCCCATCCACCTT
CGAGTTCTCCCAGGTTTGCCCCTGATCCCTGGGCCTTCCCCCGAAAAGAG
AAGAAACAAAAAAACAAAAACAAAAACAAAAAGAACAAACCATGTCCAGT
TTGTGTTGCCCATATACTTACTGGAACACGGTCAAATTGCCTGTGGCCAG
CCCCCTAATGAAAACTGAGCTGGGCAGCGGTGGCGTATGCCTTTAATCCC
AGCACTTGTGAGGCACAGGTAGTTGGATTTCTGAGTTCGATGCCAGCCTG
GTCTACTTAGTGAGTTCCAGGACAGCCAGGGCTATTCAGAGACACCCTGT
CTTGACAAAGAAAAGAATACCGAGTC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCAGCATGCATCGTTTGCA
CATCGCATGTCCCAGACATAGACGGTGTTCCCTGGGAGACCTCAAGAATG
AATCCTCTCTTGGCTGAAAAAAGAGAAAGACTCTGGCAAAGGGGAAATCG
CATTGTTGGGAAGCTTACGGGTCTTTGTGAGCAAACAATGACTACTGGGA
AAGAGTTTCCAGGACCAGTGTCCCCTATTATCAATGAAACAATAGAAAAT
CAAAATGGGCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGAAATTA
GGTAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGC
GTGACTCTAACTAAGGAAGTGAAAGATCTGCATGATGAGAACTTGAAGTC
TCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAT
GCTCATGGATTGACAGGATCACTATAGTAAAAACGGCTATCTTGCCAAAA
GCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTT
CAACGAATTGGAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAAT
CTAGGATAGTTAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATC
ACCATGCCTGACCTCAAGTTGTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_a08.g1 MSMg01no155_a08.g1 CHROMAT_FILE:
MSMg01no155_a08.g1 PHD_FILE: MSMg01no155_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:50 2005
         (439 letters)



>mm_chr14_56013805_56014643
          Length = 839

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaccagcatgcatcgtttgcacatcgcatgtcccagacatagacggtgttccctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaccagcatgcatcgtttgcacatcgcatgtcccagacatagacggtgttccctggga 260

                                                                       
Query: 61  gacctcaagaatgaatcctctcttggctgaaaaaagagaaagactctggcaaaggggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gacctcaagaatgaatcctctcttggctgaaaaaagagaaagactatggcaaaggggaaa 320

                                                                       
Query: 121 tcgcattgttgggaagcttacgggtctttgtgagcaaacaatgactactgggaaagagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgcattgttgggaagcttacgggtctttgtgagcaaacaatgactactgggaaagagtt 380

                                                                       
Query: 181 tccaggaccagtgtcccctattatcaatgaaacaatagaaaatcaaaatgggctttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaggaccagtgtcccctattatcaatgaaacaatagaaaatcaaaatgggctttctgt 440

                                                                       
Query: 241 acacaaaggataaacaggctgagaaagaaattaggtaaacaacacccttctcaatagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacaaaggataaacaggctgagaaagaaattaggtaaacaacacccttctcaatagtca 500

                                                                       
Query: 301 caaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgcatgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 caaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgatg 560

                                                                       
Query: 361 agaacttgaagtctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacttgaagtctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcc 620

                              
Query: 421 catgctcatggattgacag 439
           |||||||||||||||||||
Sbjct: 621 catgctcatggattgacag 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |