BAC Information

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BAC

Clone NameMSMg01-155K11
Chromosome14 (Build37)
Map Location 67,355,656 - 67,355,976
singlet/doubletsinglet
Overlap genenone
Upstream geneScara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a
Downstream geneENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K11.T7 (MSMg01no155_k11.b1)MSMg01-155K11.TJ (MSMg01no155_k11.g1)
ACCAG356605AG356606
length756753
length of high quality
(start - end)
339 (70 - 408)321 (71 - 391)
definitionCHROMAT_FILE: MSMg01no155_k11.b1 PHD_FILE: MSMg01no155_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:36 2005CHROMAT_FILE: MSMg01no155_k11.g1 PHD_FILE: MSMg01no155_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGTGTCCGCGGAA
TTCCATGCTCATTACAAAATTTGATATAGTCTTGGCAGGGAAGATGGCTT
ACTCAGTGGCTAAAATGCTTGACTCCCAGGAGTATGAGGACTGGGGTCAG
AGCCCCAAAAATCCAGATAAATGTTGAGTGGGTGTGTCCAGCCTGTAACC
GAAGCCTCTGAAGGTGAAATGGCATCTCCAGAGCAAGCTGGCTAGGGAGA
CTGCTCAGATCAGTGAGCTCTGGGCTCGATTGAGAGACCTGCCTGGCCTT
AATACATAAGGTAGAGAGCAGTGGAGGGTGATTCCAATATCCTTGTGCCT
TCACATGTTTGTGCACAGATGTGTACTCACACACATGCAAGAGCGTGTGC
ACACACATGAAAACAGGACAAAAAGGAAAACAAGCTATCCACCTCACCAA
ACTAGTAATAGTGTAGTATTTTGTTTATGCCCTCTTGGCACTTTTTATAG
AAACAGAAACCATTCTTAACTATTATTGAACCACAATGAACATGACTAAT
CTACTTGTTTTTGATCAACAATATTACACCTGGATTTTTTTAAGGTTCTG
ACCTCCCAATATCTCAAACTTTTGTGGCGACCCCCTCTTTTTTTTCCAAT
GCTTTTTTCTCACATTCCTTCTTTTTCTTCTGCCCTTATCTATTTTTTTC
TTTTCACCTTTTTTTTCTTCCCTATATTCTACGTTGTTGCGATTCACTCG
TTTTTA
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCAGCAACAGGAGCTGTAGGACACATGTT
CTCCTTGGATAGTGCCATGGGCCATTCCAAGGACCTCTGGGCACCTCTGG
ACAAGTGACTTCATGGGAAGGTTCACACCACAAGCATCACTGAGCATGGC
TGGCATATTTGGGAGGCTGTGTCTGGCAGAGGTTGGCCACCGTCTCGATG
CCAGCAGTCTCTCATGACTCCAAACCTCAAATCTGCTCTAAGCATAATGG
AAAAGTCGGCTTGTGAGCTGATCTTTTTGGCCCAACTGTGCTTCAGATAA
ACACAGCCCGTGGCTATTTCAGGTCTCGGTTTTAGGGAGCACCTGTGATC
TTATGCAAAGATCCCAGGCGAGAATCTTGACCCAAGCGTCTGTCCCTCTG
ATCGTCCCTACAGAGGAACCCGTACCTTGTTCTCCCTTCATCCATGTACC
ACCCTTCGTTTTTGTCCCTCTGACCCCTTTTATAACCTTTTTCTCTCCCA
TTTCCCTTTCCCATTTTCCCATTTTTCCTCTTTTTCCTGCTCCCCCTTTT
CCCGTTTAATTCCGCTTTTTCCTTATAACACCCTTTCTCCATTCCTTTTT
TCCCTTTTTCCTTTTTCCGCTTTACCCCTTTTTTTCCTTTTCCTTTTTTA
CCTTTTTTCCCCCCTTTTCCATTTTCCCTTCCTCCATCCCCTCCTTTTTC
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k11.g1 MSMg01no155_k11.g1 CHROMAT_FILE:
MSMg01no155_k11.g1 PHD_FILE: MSMg01no155_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:36 2005
         (321 letters)



>mm_chr14_67355456_67356176
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 317/321 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagcaacaggagctgtaggacacatgttctccttggatagtgccatgggccattccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagcaacaggagctgtaggacacatgttctccttggatagtgccatgggccattccaa 260

                                                                       
Query: 61  ggacctctgggcacctctggacaagtgacttcatgggaaggttcacaccacaagcatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacctctgggcacctctggacaagtgacttcatgggaaggttcacaccacaagcatcac 320

                                                                       
Query: 121 tgagcatggctggcatatttgggaggctgtgtctggcagaggttggccaccgtctcgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcatggctggcatatttgggaggctgtgtctggcagaggttggccaccgtctcgatg 380

                                                                       
Query: 181 ccagcagtctctcatgactccaaacctcaaatctgctctaagcataatggaaaagtcggc 240
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 381 ccagcagtctctcatgactccaaacctcaaatctgctctaagcagaagggaaaagtcggc 440

                                                                       
Query: 241 ttgtgagctgatctttttggcccaactgtgcttcagataaacacagcccgtggctatttc 300
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgagctgagctttttggtccaactgtgcttcagataaacacagcccgtggctatttc 500

                                
Query: 301 aggtctcggttttagggagca 321
           |||||||||||||||||||||
Sbjct: 501 aggtctcggttttagggagca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)