BAC Information

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BAC

Clone NameMSMg01-155P14
Chromosome14 (Build37)
Map Location 99,249,400 - 99,376,528
singlet/doubletdoublet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P14.T7 (MSMg01no155_p14.b1)MSMg01-155P14.TJ (MSMg01no155_p14.g1)
ACCAG356833AG356834
length731736
length of high quality
(start - end)
516 (73 - 588)521 (77 - 597)
definitionCHROMAT_FILE: MSMg01no155_p14.b1 PHD_FILE: MSMg01no155_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:59 2005CHROMAT_FILE: MSMg01no155_p14.g1 PHD_FILE: MSMg01no155_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,249,400 - 99,249,915)(99,376,008 - 99,376,528)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAATTGGGAAGAAAACAACTGTTTTCTGTCCTGTCAGTATTTATT
TTGAGCTGTGTCCTCGACTGCATAGCACCAGCTCTTAATTATTTAGAGAA
TAATTGTCCATTTGTGGTTGATCAAATCCTCTTCCTTCTCCCATGCTTCC
TGCCTTTGGGGCATTTCACTGCTCATTAATATTTGCACCAGAGACCAGAC
CTTCTGCTTAACCGGTGAGTCTGGTAAAAATAAAATAAAATATATGGGTG
GGCTACAAGACAGAAAGCATAGACTACGCGAGCTGTAATGGCCGAGTCAG
GGTCTCATCCAGCAGGAATGGTTTAAGTCGATCACAAACGATAATGTGTT
CATTTGTGATTTCTTGGTAGAGAGGCACCACTCCCTTTTAGCCTTCCGTC
CCACTGACATATTTTTCTCTAATTTGATCCTTGCTGTTTGGACCACAGAT
CACTGGAATTTGGCAAAAGATACAGATATCTTTCTGATGGAGTTTGAAAC
TGCTCGAGTTTTTTTTTTTTTTAACTCTTCCTTTCTCACCCCTAGAATCC
TCAATAAATACATCTTTCATGTATTAAGAGATAAATGAAAGGCATGCTCT
CCCCCAAGTATTTGTGTGTCGGCACATAAAATACAGCAATCAGCGTCTTG
GTCCACCTCCCCCACCCCTCAAGGATGCTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTACTTTCTCACCTTGCTATC
ACAAGACCTGTGTGAAGAGTCTCAGAGAATATCCCTCCTGATCCAGCTAG
CAGCCCATCTGTTCTTTGGGTCTGCCCTGTGTCTACCTGCCACCCTTTTG
CCCTTGGCCAGATTTACATTTCTCTTTGTATCAGTTGATGAAATCTTCTT
CCTACATCAAGTTCCTACTCAAATTCTACTTACTTTACAAAGCAGAAATA
TTAGCTTCTATTTCTAGCTCCACTTAGCGACTTTCTGAACCTTTCCCTTT
TATGGCATGTACCTTTTCTATTGCATGCTTCTTAATTTTCCCTGATCTAT
TACAAGGCCTTCAAAGTATTATGAGAAACAATATTTATATATAAGTATAT
GATTAATATAACATTAAGCAATTAACAAAATAATAATGTTAACTTTATGA
TCCTTTCAACCTCTATATGAGATCAAAGGCATCAAAATATAAATATTGAG
GCAGGATCCAAGCAGGAACTATGTTATAAATATAATAGGGCAGGAAACAG
CTCATGAGTGGACTGCACTTCACTAAGGCAGTGTCAGAGTGTATCGAATG
TCATGTCGACTCTCTAATGTCCTCCGAAGTCCATTTAGCTTCTATGCAGT
ATCTTTTTGCCCCTTTTACTTCTTATAAAAATATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p14.b1 MSMg01no155_p14.b1 CHROMAT_FILE:
MSMg01no155_p14.b1 PHD_FILE: MSMg01no155_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:59 2005
         (516 letters)



>mm_chr14_99249200_99250115
          Length = 916

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttttctgtcctgtcagtatttattttgagctgtgtcctcgactgcatagcaccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttttctgtcctgtcagtatttattttgagctgtgtcctcgactgcatagcaccagc 260

                                                                       
Query: 61  tcttaattatttagagaataattgtccatttgtggttgatcaaatcctcttccttctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaattatttagagaataattgtccatttgtggttgatcaaatcctcttccttctccc 320

                                                                       
Query: 121 atgcttcctgcctttggggcatttcactgctcattaatatttgcaccagagaccagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcttcctgcctttggggcatttcactgctcattaatatttgcaccagagaccagacct 380

                                                                       
Query: 181 tctgcttaaccggtgagtctggtaaaaataaaataaaatatatgggtgggctacaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcttaaccggtgagtctggtaaaaataaaataaaatatatgggtgggctacaagaca 440

                                                                       
Query: 241 gaaagcatagactacgcgagctgtaatggccgagtcagggtctcatccagcaggaatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagcatagactacgcgagctgtaatggccgagtcagggtctcatccagcaggaatggt 500

                                                                       
Query: 301 ttaagtcgatcacaaacgataatgtgttcatttgtgatttcttggtagagaggcaccact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagtcgatcacaaacgataatgtgttcatttgtgatttcttggtagagaggcaccact 560

                                                                       
Query: 361 cccttttagccttccgtcccactgacatatttttctctaatttgatccttgctgtttgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccttttagccttccgtcccactgacatatttttctctaatttgatccttgctgtttgga 620

                                                                       
Query: 421 ccacagatcactggaatttggcaaaagatacagatatctttctgatggagtttgaaactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacagatcactggaatttggcaaaagatacagatatctttctgatggagtttgaaactg 680

                                               
Query: 481 ctcgagttttttttttttttaactcttcctttctca 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcgagttttttttttttttaactcttcctttctca 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_p14.g1 MSMg01no155_p14.g1 CHROMAT_FILE:
MSMg01no155_p14.g1 PHD_FILE: MSMg01no155_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:59 2005
         (521 letters)



>mm_chr14_99375808_99376728
          Length = 921

 Score = 1007 bits (521), Expect = 0.0
 Identities = 521/521 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttactttctcaccttgctatcacaagacctgtgtgaagagtctcagagaatatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 catttactttctcaccttgctatcacaagacctgtgtgaagagtctcagagaatatccct 662

                                                                       
Query: 61  cctgatccagctagcagcccatctgttctttgggtctgccctgtgtctacctgccaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cctgatccagctagcagcccatctgttctttgggtctgccctgtgtctacctgccaccct 602

                                                                       
Query: 121 tttgcccttggccagatttacatttctctttgtatcagttgatgaaatcttcttcctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttgcccttggccagatttacatttctctttgtatcagttgatgaaatcttcttcctaca 542

                                                                       
Query: 181 tcaagttcctactcaaattctacttactttacaaagcagaaatattagcttctatttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaagttcctactcaaattctacttactttacaaagcagaaatattagcttctatttcta 482

                                                                       
Query: 241 gctccacttagcgactttctgaacctttcccttttatggcatgtaccttttctattgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctccacttagcgactttctgaacctttcccttttatggcatgtaccttttctattgcat 422

                                                                       
Query: 301 gcttcttaattttccctgatctattacaaggccttcaaagtattatgagaaacaatattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcttcttaattttccctgatctattacaaggccttcaaagtattatgagaaacaatattt 362

                                                                       
Query: 361 atatataagtatatgattaatataacattaagcaattaacaaaataataatgttaacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatataagtatatgattaatataacattaagcaattaacaaaataataatgttaacttt 302

                                                                       
Query: 421 atgatcctttcaacctctatatgagatcaaaggcatcaaaatataaatattgaggcagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgatcctttcaacctctatatgagatcaaaggcatcaaaatataaatattgaggcagga 242

                                                    
Query: 481 tccaagcaggaactatgttataaatataatagggcaggaaa 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccaagcaggaactatgttataaatataatagggcaggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)