BAC Information

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BAC

Clone NameMSMg01-157B10
Chromosome14 (Build37)
Map Location 105,098,422 - 105,233,410
singlet/doubletdoublet
Overlap geneD130009I18Rik
Upstream geneSlain1, Ednrb, Pou4f1, 2610206B13Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157B10.T7 (MSMg01no157_b10.b1)MSMg01-157B10.TJ (MSMg01no157_b10.g1)
ACCAG357660AG357661
length727724
length of high quality
(start - end)
318 (45 - 362)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no157_b10.b1 PHD_FILE: MSMg01no157_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:22 2005CHROMAT_FILE: MSMg01no157_b10.g1 PHD_FILE: MSMg01no157_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,233,098 - 105,233,410)(105,098,422 - 105,098,712)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTGTGCCAGTCCAGGCGTTCTTCTTTCTCTCATTTTACTGCTTC
TTGGTGGCTACATTTAATTACAGGGAAAACCAGTCTCATATCCCAGGCTT
CTTGTAGCAACCTTGTGAAGTCTTGGACACATTGTTTACAGTTTGGATTA
GTCACTTTTCCAATGCTGTAACACCATCCCGGAGACAACCAATGTAAAGG
AGAAAATATTTATCCGGGTTCATGGTTTCAGCCCATAGTTGTTTGGCATG
TCAGAATAGCAAGGCAGAGCATTCAAGGTAGAGCCAAGATGCTTACATTA
TTAGTAGTTGGTAAGCACACACCCCCACATAGTGAGACATGGTCTAGGTT
CCCAAAGTTCTCTTTCATCTTCTAGTAGTTGGTAGCTGAGCTGTATCACT
GGACGACCCTGAAGATTCAAGCCATGACTGGGATAGACATACTATCTTTT
TTTCTGTAGTAATGTCTGTTGCCTTAAATGTTAAGATGGACACTAATATT
TTAAGTATATACATTATTTCCTCCAATGTTTCTGGAAAAGAAGGCTAACC
AACTAAGTTTATGAGTATAGTTCCAAGAAGGGCTTAGTTAGACCCCATAT
TGGAGAATATAACAAAATTAGCAAAAATGTTTGTAGGTGTGGAAACTAAT
CAGATGTTGTAGAACTGATCAATGGAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTAGACCACTGGTGTGCTCAGGTTT
CATAAAGCGTATACAGTGTTCATTCCCTTTGCTTGTAAAAGGGACTCAGA
GGGAGCTAGATGACATTCACCTTGGCGAAAGTTGTTGATGGATTCAGACA
AAACCTCTAAAGGATCCTTTTCTGAATTACTCCTATCCTGGAAAACACAG
GATTTACGAAAGACTGAACCCTTAGATATAATTATCAGGGAATATAATTA
CAAGAGACAAGATCTACAGACTTGCTAATGCAGTTCCCTTCGTTTTCTGG
ATGATACAGTGAGTAGCCTCACGGCCACACAGCCTTATTTGTGTCCTTTC
CACCAAACTACAGTCCCTCATTGCAACAAATGACAAGAAGGACAATGACC
TTCAGTCATTGCTCCTGGACCTACTAGAACAGAGCTGCCCCCTCCCTGAC
CTTGGAGTGCAGAATGCCCTAGTAAGCAAGCAACTCTATGGAGGGTGGGA
GCAATCTTTCCCTGAGATTTGGAGCATATAGCAACAGCACACGGGGAGCC
TGGACTGACCCCTCCAAGAATCCACCGGCTGCCTTGTCCCAGGTGGGGAC
ATATAGTTCATCTATCATGCTCCTGCTTCGGAAGAATGAGTCACCATCAC
CTGAGGCCATTGAAAAGTCCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_b10.b1 MSMg01no157_b10.b1 CHROMAT_FILE:
MSMg01no157_b10.b1 PHD_FILE: MSMg01no157_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:22 2005
         (318 letters)



>mm_chr14_105233058_105233775
          Length = 718

 Score =  543 bits (281), Expect = e-159
 Identities = 305/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattgtgccagtccaggcgttcttctttctctcattttactgcttcttggtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaattctattgtgccagtccaggcgttcttctttctctcattttactgcttcttggtggc 294

                                                                       
Query: 65  tacatttaattacagggaaaaccagtctcatatcccaggcttcttgtagcaaccttgtga 124
           |||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 293 tacatttaattacaggaaaaaatagtctcatatcccaggcttcttgtagcaaccttgtga 234

                                                                       
Query: 125 agtcttggacacattgtttacagtttggattagtcacttttccaatgctgtaacaccatc 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 233 agtcttggacacattgtttacagtttggattagtcacttttccagtgctgtaacaccatc 174

                                                                       
Query: 185 ccggagacaaccaatgtaaaggagaaaatatttatccgggttcatggtttcagcccatag 244
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 173 tcggagacaaccaatgtaaaggagaaaatatttatctgggttcatggtttcagcccatag 114

                                                                       
Query: 245 ttgtttggcatgtcagaatagcaaggcagagcattcaaggtagagccaagatgcttacat 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttgtttggcatgtcagagtagcaaggcagagcattcaaggtagagccaagatgcttacat 54

                        
Query: 305 tattagtagttgg 317
           ||||||| |||||
Sbjct: 53  tattagtggttgg 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_b10.g1 MSMg01no157_b10.g1 CHROMAT_FILE:
MSMg01no157_b10.g1 PHD_FILE: MSMg01no157_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:22 2005
         (291 letters)



>mm_chr14_105098222_105098912
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagaccactggtgtgctcaggtttcataaagcgtatacagtgttcattccctttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttagaccactggtgtgctcaggtttcataaagcgtatacagtgttcattccctttgct 260

                                                                       
Query: 61  tgtaaaagggactcagagggagctagatgacattcaccttggcgaaagttgttgatggat 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgtaaaagggactcagagggagctagatgacattcaccttggcgaaagctgttgatggat 320

                                                                       
Query: 121 tcagacaaaacctctaaaggatccttttctgaattactcctatcctggaaaacacaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagacaaaacctctaaaggatccttttctgaattactcctatcctggaaaacacaggat 380

                                                                       
Query: 181 ttacgaaagactgaacccttagatataattatcagggaatataattacaagagacaagat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttacgaaagactgaacccttcgatataattatcagggaatataattacaagagacaaaat 440

                                                              
Query: 241 ctacagacttgctaatgcagttcccttcgttttctggatgatacagtgagt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagacttgctaatgcagttcccttcgttttctggatgatacagtgagt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)