BAC Information

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BAC

Clone NameMSMg01-157I10
Chromosome14 (Build37)
Map Location 51,013,324 - 51,013,642
singlet/doubletsinglet
Overlap geneOlfr736
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11
Downstream geneOlfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157I10.T7 (MSMg01no157_i10.b1)MSMg01-157I10.TJ (MSMg01no157_i10.g1)
ACCAG357985AG357986
length707728
length of high quality
(start - end)
323 (38 - 360)---
definitionCHROMAT_FILE: MSMg01no157_i10.b1 PHD_FILE: MSMg01no157_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:53 2005CHROMAT_FILE: MSMg01no157_i10.g1 PHD_FILE: MSMg01no157_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGC
AAGGGGAAGAGTCTACAGTGATGGCATGATACTTATAATTTTGAACTGTC
TCTCTGTGAAAAGTTCCCATGTACCTGCCAGTCTCTCCATTAATTAATGA
CCTATGGCTTCAGGCTTCTGACATTGCCATATAAGATTGTGATCGACAAA
TATGATGGATCACATTAGTTGTTGTTCTACAATGTACAAATCCAGTGGTC
ACATGTTGAACATGTCTAAGACTCCAAGCTCATTTTAAATAATTCACTAT
ACCTAAGTCCTTCTAAGAACCTCCTACAACCTTTTTCAAGGCATCTTTCA
TTTTTTTATTTCCCACCCTATAGATCATGGGGTTGAAGAAAGGAGTCATA
ACTGAATAGAATAAAGATGTGAACTTCTGCATGCCCTTTGCTTGTCCTGA
TCCTGGGCTTACATATGTTATCATGACTGAACCATAAAATAGAAATACAA
CAGCCAGGTGTGATGAACAGGTGGAGAATGCCTTCTTTGAACCAGCAGAA
GAGGGCATCCGGATCACAGCCCTCAGCACTAAGGTATATGAACCAATAAT
ATAAAAAAATGTGCCAAAGATGAGGAGGGAACTCATAGTGCCACAGATGA
GAATAGTGCCTGGGATTGGGACACAGACTGAAGCTAGGGCCAGCAAGGGA
CCAAGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAATATCCTAATAGGGGAATTAATATTAAGGGAA
TTTTAAAAAAGGAAAAAATTAAAAGGAAAACCCCCCCTGGTACTTAAATT
CCCTTATATAATTAACCGGACAATTATAAAATTACTTTACTTCCCTTACT
TAACCCCCCTATTTTTTACTTACTGGCCAACCCTTAAAAAACTTATTAAA
ATACTTATCCTTTGAACCCTATGCAAAACAAAACCTCAAAAGGTATATAA
GGGTAATAAACACTTGCTTGCAGGGATAAACTTATACTTTGAAAACGGGA
ATGTTTTTTCTTCCCCCCACCCCAAAAAACTTATAAGAAAAGGTATATAA
GGAAAAGGCTTAATATAAAGGGGAAAAAGGCCCGGGGAATCCAAAATTCT
AAAAATTATTAGGGGAGGAAAATGGCCTTTCATAATTTTAAAAGGGAAAT
TCTGGAATTTAATAACTCTATAATTCTAAAATTACAAAACCAAATGGACT
TGGGTTAATCTTCAACCGGATCCCAAAGCCCAAAATTAGGGTTAATCAAA
ATTCCTGGAAAAATTAAACCTAGTATTTTATAAAACCAGAACCCTAAAAA
AAATTTCCTTTTAAATTCCCATCATACCATTTTGGAATTTATGGTGGGGC
CAATCCCCCCAGGTTCCACCGGCAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_i10.b1 MSMg01no157_i10.b1 CHROMAT_FILE:
MSMg01no157_i10.b1 PHD_FILE: MSMg01no157_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:53 2005
         (323 letters)



>mm_chr14_51013120_51013842
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcaaggggaagagtctacagtgatggcatgatacttataattttgaactgtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattctgcaaggggaagagtctacagtgatggcatgatacttataattttgaactgtct 464

                                                                       
Query: 65  ctctgtgaaaagttcccatgtacctgccagtctctccattaattaatgacctatggcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctctgtgaaaagttcccatgtacctgccagtctctccattaattaatgacctatggcttc 404

                                                                       
Query: 125 aggcttctgacattgccatataagattgtgatcgacaaatatgatggatcacattagttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aggcttctgacattgccatataagattgtgatcgacaaatatgatggatcacattagttg 344

                                                                       
Query: 185 ttgttctacaatgtacaaatccagtggtcacatgttgaacatgtctaagactccaagctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttgttctacaatgtacaaatccagtggtcacatgttgaacatgtctaagactccaagctc 284

                                                                       
Query: 245 attttaaataattcactatacctaagtccttctaagaacctcctacaacctttttcaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attttaaataattcactatacctaagtccttctaagaacctcctacaacctttttcaagg 224

                              
Query: 305 catctttcatttttttatt 323
           |||||||||||| ||||||
Sbjct: 223 catctttcatttctttatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)